PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539757.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 498aa    MW: 53501.3 Da    PI: 3.9284
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539757.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM81.12.3e-25121481128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk... 88 
                        lppG++F+P+d+elv+++L ++++gk+l+l+ vi e+d+++v Pw+L ++ +++ +e +fF+++++k+ +g+r++r +   g+W+ +     
  KN539757.1_FGP001  12 LPPGLKFDPRDDELVSRFLLRRLQGKPLPLHGVILEADLLSVPPWKLLAE-HGRGDEGFFFAEARSKNGKGSRQKRtVEGGGVWQGQRVcid 102
                        79****************************99***************744.4567799******************5555899*96654332 PP

                NAM  89 dkevlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +++l+         + e  + k +L f+ ++ ++g ++ Wvmhey++
  KN539757.1_FGP001 103 GEKLLVPdggggggvEVEIAWRKYMLSFF-AEGERG-SSGWVMHEYAV 148
                        22333335666544333348888899999.445554.89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.27E-309167IPR003441NAC domain
PROSITE profilePS5100528.54512167IPR003441NAC domain
PfamPF023653.0E-1413147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MAAGGGADGD GLPPGLKFDP RDDELVSRFL LRRLQGKPLP LHGVILEADL LSVPPWKLLA  60
EHGRGDEGFF FAEARSKNGK GSRQKRTVEG GGVWQGQRVC IDGEKLLVPD GGGGGGVEVE  120
IAWRKYMLSF FAEGERGSSG WVMHEYAVTS PAELAASPIR LYRVRFSGHG KKRKREPQSG  180
EDGVGRARAA PQSARTEDAL VEERIPPPQP VPIPPIARTE DALDVGTEGR AAPQSAGTDA  240
GVDGLYSWAD FEFPEISMDE LPSCIDFTTT DPSCLDIELS MGDLHEPQST GIESDLLEEF  300
VPQPQPVLVP PLAALVEVAD SSEGPDQGCS VVMHDSSAVF THLSDPIVLP EEEEEADRPD  360
APAGTMSLDY QNYSLSDFEF PEYPLLDVAG DADGADQCSS NVMDDSSMVF SHLEDLITLP  420
AEEAEADACS AAPAPSLDNQ KYSSQGIIDS EAPALSDFEF PETIDEVLNS INFTMAGPSC  480
LDMEFSMDDL LDFDLPAD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539757.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638590.11e-110uncharacterized protein LOC107275325
TrEMBLA0A0E0EA230.0A0A0E0EA23_9ORYZ; Uncharacterized protein
STRINGOMERI07G08450.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.15e-10NAC domain containing protein 86