PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539105.1_FGP011
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 896aa    MW: 103313 Da    PI: 9.6757
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539105.1_FGP011genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.24.9e-2124113199
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        ffkv+     +++ ++++p kfae++  +   + t++l+ ++g++ +v +  +k+s++ vltkGW eF++++++k gDf+vF+++g+s+f  
  KN539105.1_FGP011  24 FFKVM--IGGFRR-QMTIPYKFAENFRDQ--IQGTIKLKARNGNTCSVLV--DKCSNKLVLTKGWAEFANSHDIKMGDFLVFRYTGNSQF-- 106
                        56666..445555.6********888655..4459***************..**************************************.. PP

                        EEEEE-S CS
                 B3  93 vvkvfrk 99 
                         vk+f+ 
  KN539105.1_FGP011 107 EVKIFDP 113
                        9999986 PP
2B335.71.5e-11212292183
                        EEEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEE CS
                 B3   1 ffkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFk 83 
                        f+ v+++s+v+++ + + +++k+a+e+  gg+    ++lt  +++g++W+vk++++k++ r +l+kGW++F ++n+L+   D + ++
  KN539105.1_FGP011 212 FVAVMKKSNVTRQpCYVAISRKYANEYfpGGD----QMLT-LQRHGKRWQVKFCISKRKLR-MLSKGWRKFTRDNELQgIVDCMKLT 292
                        77889999999999999**********76555....3455.667*********77666666.89*************9555655555 PP
3B3651.2e-203234041299
                        HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         ++r+++p kfa++++g+   s t++le +sg +++v++  +kk +  vl++GW++Fv+a++L+ gDf+vFk++g  +f l v +f+ 
  KN539105.1_FGP011 323 FHKRMTIPDKFARHFKGV--ISNTIKLEPRSGYTFDVQV--TKKLNILVLGSGWESFVNAHDLNMGDFLVFKYNG--DFLLQVLIFDP 404
                        4568********999999..888****************..*******************************976..88889999985 PP
4B354.52.1e-17602688297
                        EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                 B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                        fkv+     ++  r+++p++f++ + gk   ++ ++l+ ++g +++v++  +k+ g++ l++GWk Fv a++L+ gDf+vF++dg se   +
  KN539105.1_FGP011 602 FKVM--IGRFR-ERMIIPNEFLQYFRGK--IPRIIQLQLRDGCTYDVQV--TKNLGKISLQSGWKAFVTAHDLQMGDFLVFSYDGISEL--K 684
                        5555..44444.57********555555..55679999999********..********************************985555..7 PP

                        EEEE CS
                 B3  94 vkvf 97 
                        v +f
  KN539105.1_FGP011 685 VLIF 688
                        7777 PP
5B349.57.7e-168128951299
                        HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  12 ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        ks+ + + +++a+ +    ke    +tle ++g++Wev ++ +k  ++  l++GW++F+++n+L++gD+++F+l +++e +++v+++ k
  KN539105.1_FGP011 812 KSQTVDICREYADVYlP-FKEL--NMTLE-RHGKKWEVLCR-TKETRTKRLSTGWSRFAQENNLQVGDICLFELLKNKEYSMNVHIIPK 895
                        56667777888877742.2233..34443.7*********5.444444789************************999999***99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-2418116IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-2518116IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.5921114IPR003340B3 DNA binding domain
CDDcd100171.15E-2023112No hitNo description
SMARTSM010191.5E-1324114IPR003340B3 DNA binding domain
PfamPF023625.6E-1924112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.4E-24200283IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-15205283IPR015300DNA-binding pseudobarrel domain
CDDcd100174.68E-13210283No hitNo description
SMARTSM010198.9E-4212307IPR003340B3 DNA binding domain
PfamPF023628.2E-10212283IPR003340B3 DNA binding domain
PROSITE profilePS508639.122213307IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-23309407IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-24311418IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.816312405IPR003340B3 DNA binding domain
CDDcd100172.60E-20313403No hitNo description
SMARTSM010191.1E-11315405IPR003340B3 DNA binding domain
PfamPF023623.0E-18315403IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.8E-5476549IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-21594693IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.479598691IPR003340B3 DNA binding domain
SMARTSM010191.6E-11601691IPR003340B3 DNA binding domain
CDDcd100174.14E-20601688No hitNo description
PfamPF023622.1E-15601688IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-21611701IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-21794893IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-18795893IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.28801896IPR003340B3 DNA binding domain
CDDcd100176.45E-14803894No hitNo description
SMARTSM010194.7E-9804896IPR003340B3 DNA binding domain
PfamPF023621.7E-14811895IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 896 aa     Download sequence    Send to blast
MSKSGCERCR GRGFGDTDDQ DTYFFKVMIG GFRRQMTIPY KFAENFRDQI QGTIKLKARN  60
GNTCSVLVDK CSNKLVLTKG WAEFANSHDI KMGDFLVFRY TGNSQFEVKI FDPSGCVKAA  120
SHNAVNIGQH AQNMQGDPIE ILSCSDEHLR AQSLTTERQN QPEKDVIDNC NKKMKTEHAS  180
SSEDDQETPT AEVHRMKVEE MVRAIHSNHP VFVAVMKKSN VTRQPCYVAI SRKYANEYFP  240
GGDQMLTLQR HGKRWQVKFC ISKRKLRMLS KGWRKFTRDN ELQGIVDCMK LTRCGQKMRK  300
LNTRSTARDV QEKYFFKVMI GDFHKRMTIP DKFARHFKGV ISNTIKLEPR SGYTFDVQVT  360
KKLNILVLGS GWESFVNAHD LNMGDFLVFK YNGDFLLQVL IFDPSGCEKS TSCSMENAID  420
HVGQGWKEHN DISTSYHDQP KGNKHWMQRD SSSEGCILPR GTCLPVVQEK KMKEKIQAIH  480
SKTPMYGNVM TKCNVFGSPC VLEITQLYDD AYLPYNNGEE LMLRHRDKSW KVRFYRFKNK  540
SRKLTQGTKK RKEHLVLLLK QFLHVYIAAS SLYKMRRPGA RCREGHAHFN GNHIDGQYKN  600
FFKVMIGRFR ERMIIPNEFL QYFRGKIPRI IQLQLRDGCT YDVQVTKNLG KISLQSGWKA  660
FVTAHDLQMG DFLVFSYDGI SELKVLIFGP SGCEKVHSCP TLKSATHCGE KWEEPLHTSS  720
NSHELPVKSP QSVSKSEKQW DSSEQENDTT NIEEVALQGD DLQVRPVLNC ILPKHTRLTD  780
MQKQQLESKV GAIHSEIPIY GCILRKSRVH GKSQTVDICR EYADVYLPFK ELNMTLERHG  840
KKWEVLCRTK ETRTKRLSTG WSRFAQENNL QVGDICLFEL LKNKEYSMNV HIIPKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539105.1_FGP011
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0972800.0AC097280.8 Oryza sativa chromosome 3 BAC OSJNBb0111B07 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880058.10.0putative B3 domain-containing protein Os03g0621600 isoform X1
SwissprotQ851V50.0Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLB9F9R40.0B9F9R4_ORYSJ; Uncharacterized protein
STRINGORGLA03G0244700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-24B3 family protein