PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539105.1_FGP007
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 349aa    MW: 39272.2 Da    PI: 5.0339
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539105.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.46.3e-19421221499
                        T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          +++p +fa++++g    s  + l+++sg++W++ +   +++ +  vl++GWkeFv+ang++e+D ++F+++g s+f   v +f+ 
  KN539105.1_FGP007  42 ESMIVPSRFANNFNGH--ISEVVNLKSPSGKTWSIGV--ANSDTGeLVLRSGWKEFVDANGVQENDCLLFRYSGVSSF--DVLIFDP 122
                        45899*****888666..6779***************..5555555***************************99999..8888875 PP
2B343.94.4e-142733471386
                        T..T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3  13 s..grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        s  + + +p +fa ++ g+ +  +++++e    g +W v++  r +s++ + ++GW++F+++ngL + D+++F+l++
  KN539105.1_FGP007 273 SrySTVGVPPEFAGRYLGP-AMAREVVMERgGGGGQWHVRFVRRESSRG-FHGTGWRRFARDNGLLAHDVCLFELSS 347
                        33366789********555.45678999995667*******65555555.6788********************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-2328128IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.7E-2328125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.00229123IPR003340B3 DNA binding domain
SMARTSM010199.9E-1132123IPR003340B3 DNA binding domain
CDDcd100177.49E-1940121No hitNo description
PfamPF023624.8E-1642121IPR003340B3 DNA binding domain
SuperFamilySSF1019366.47E-16255348IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.4E-16255348IPR015300DNA-binding pseudobarrel domain
CDDcd100179.15E-14259346No hitNo description
SMARTSM010190.0072261349IPR003340B3 DNA binding domain
PROSITE profilePS5086312.534263349IPR003340B3 DNA binding domain
PfamPF023627.8E-12275347IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGMLKIGKNC SVCKEWQEHC YWSHMADDCK HFLTYMVGDF TESMIVPSRF ANNFNGHISE  60
VVNLKSPSGK TWSIGVANSD TGELVLRSGW KEFVDANGVQ ENDCLLFRYS GVSSFDVLIF  120
DPSGCEKASP HFVGNRGFGR EEKSAGAEGG GRDGDKNGHH QHQLEMTPHK NSSRCRSIPR  180
ACERGLFSDE IEQDHREEKK EGDDDDEDED EDEDEDEDED GQDRYYFCRH GGRVTEYNLS  240
EGDKEEISRV PVPVEPGNPV LVKVIHASHL LSSRYSTVGV PPEFAGRYLG PAMAREVVME  300
RGGGGGQWHV RFVRRESSRG FHGTGWRRFA RDNGLLAHDV CLFELSSNW
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539105.1_FGP007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0635060.0AK063506.1 Oryza sativa Japonica Group cDNA clone:001-116-F06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630283.10.0B3 domain-containing protein Os03g0622100
SwissprotQ10GM40.0Y3221_ORYSJ; B3 domain-containing protein Os03g0622100
TrEMBLA0A0D3FLD20.0A0A0D3FLD2_9ORYZ; Uncharacterized protein
STRINGOBART03G26350.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.18e-29B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]