PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539105.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 303aa    MW: 34563.7 Da    PI: 9.7417
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539105.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.26.7e-23371181299
                        HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         + r+++p++f+ ++ggk   +k ++le++sg +++v++  +k+sgr+vl++GW ++v+a++Lk gDf+vFk++g+s+   +  +f++
  KN539105.1_FGP003  37 FHERVTIPNEFLHNFGGK--IPKSIKLETRSGLTFDVQV--TKNSGRVVLQSGWASYVSAHDLKIGDFLVFKYSGDSQL--KTLIFDQ 118
                        3568********888888..6778***************..********************************998777..7777765 PP
2B343.65.3e-142213021599
                        -EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                 B3  15 rlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                         + ++kk+a+ +       e+ t++l + +g+sW+v+++ +k+ ++ +l+ GW++F+ +n+L  gD+++F l ++ ++  + v+++r+
  KN539105.1_FGP003 221 TVEISKKYADVYlpF----EDGTVVL-QHHGKSWNVRCCLTKQNSKRFLK-GWRQFAGDNKLHLGDICLFDLLKDkKKYVMDVHIIRR 302
                        566778888666431....2225555.55*********996655554555.********************99887888888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-2324121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-2325121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.09826119IPR003340B3 DNA binding domain
CDDcd100174.19E-2127117No hitNo description
SMARTSM010194.4E-829119IPR003340B3 DNA binding domain
PfamPF023625.0E-2130117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.3E-22198302IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-20199302IPR015300DNA-binding pseudobarrel domain
CDDcd100174.55E-16204301No hitNo description
PROSITE profilePS5086311.984207303IPR003340B3 DNA binding domain
SMARTSM010190.001208303IPR003340B3 DNA binding domain
PfamPF023622.3E-12222302IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MSKGGERCSK EGDDAYFDWN RTNGEDKHFF KVMLGDFHER VTIPNEFLHN FGGKIPKSIK  60
LETRSGLTFD VQVTKNSGRV VLQSGWASYV SAHDLKIGDF LVFKYSGDSQ LKTLIFDQSG  120
CEKVCEKPVD MSGRSYDIAM RNSQDEKKKR KQRDISRQGT VKPSEEGLKA ELVPGCILPS  180
RTDLTRLQKN ILTVKVKAIN SETPIYGYVM NNSSIHGIPC TVEISKKYAD VYLPFEDGTV  240
VLQHHGKSWN VRCCLTKQNS KRFLKGWRQF AGDNKLHLGD ICLFDLLKDK KKYVMDVHII  300
RRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539105.1_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0972800.0AC097280.8 Oryza sativa chromosome 3 BAC OSJNBb0111B07 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629587.10.0putative B3 domain-containing protein Os03g0621600
SwissprotQ851V10.0Y3160_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLA0A0E0D3S30.0A0A0E0D3S3_9ORYZ; Uncharacterized protein
STRINGOMERI03G23150.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-23B3 family protein