PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539003.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 1179aa    MW: 130125 Da    PI: 8.631
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539003.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.0009410851107323
                         ET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                         Cp   Cgk F ++ +L +H ++H
  KN539003.1_FGP001 1085 CPvkGCGKKFFSHKYLLQHRKVH 1107
                         9999*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005453.1E-152465IPR003349JmjN domain
PROSITE profilePS5118313.8832566IPR003349JmjN domain
PfamPF023755.3E-132659IPR003349JmjN domain
SMARTSM005581.1E-6172384IPR003347JmjC domain
PROSITE profilePS5118419.52175384IPR003347JmjC domain
SuperFamilySSF511978.79E-12187259No hitNo description
PfamPF023731.6E-15205276IPR003347JmjC domain
SMARTSM003551710601082IPR015880Zinc finger, C2H2-like
SMARTSM003550.6210831107IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.61210831112IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.8E-610851111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028010851107IPR007087Zinc finger, C2H2
SuperFamilySSF576673.9E-1010991141No hitNo description
Gene3DG3DSA:3.30.160.601.4E-811121137IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002911131137IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.32311131142IPR007087Zinc finger, C2H2
PROSITE patternPS00028011151137IPR007087Zinc finger, C2H2
SuperFamilySSF576679.06E-811311165No hitNo description
Gene3DG3DSA:3.30.160.607.7E-911381166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.711431169IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1811431174IPR007087Zinc finger, C2H2
PROSITE patternPS00028011451169IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0040010Biological Processpositive regulation of growth rate
GO:0045815Biological Processpositive regulation of gene expression, epigenetic
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
GO:0071558Molecular Functionhistone demethylase activity (H3-K27 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 1179 aa     Download sequence    Send to blast
MRPSPPPAAP AAEPVPPWLR SLPVAPEFRP TSAEFVDPVA YILKIEPAAA PYGICKVVPP  60
LPPPPKKATL SNLSRSFAAL HPDDRSPSFP TRHQQFESKA GATRKSLLAG LNVPASRQLT  120
PLDHEVLFWR ASADRPIVVE YGSDMSGSGF SPCAAQPQPP QQQQPTARAA AHVGETAWNM  180
RGVARSPGSL LRFMPEDVPG VTTPMLYVGM TFSWFAWHVE DHDLHSLNYM HLGAAKTWYG  240
MPRDAALAFE DVVREHGYGG EIGAECRGIC GHFSRILSLR FQSWEPSNGE METRSSRIKE  300
KKKCEGEQLV KKMFIQNVIE DNELLSHLLN DGSSCIILPA NAHDGPGLST LRSTDQSNMN  360
SRISHNLCSR EEAPEASGCL SLNRNGDTRN CISSDTHNME GDKGDIMSAT GLLDQGLLSC  420
VTCGILSFSC VAVLKPRDST ARYLMSADSN SINNQLSISG GSILADAPTN ERNGVISRPY  480
SEHCCNEIMS DDAEIDKNSA LDLLAFAHGG QSDPEEDPLE KILKIAHGIN KSQPNSSNNV  540
GCVGTKLSSS STERQERPSS QNAHCNGSSV ISNGPKGVRT RNKYQLKMVL SEGFQAKDIY  600
SVKEKKVQSE PSSSKGDVKE TVDVSGTEND VGCKSTTISV SEHRGSTKNL YPVKEKKVQS  660
KPSSLKGTVK ETVDVSGTEN DARCKSTTIS VSEHRGSTPM TNSLAASIVK PDKDSSRMHV  720
FCLEHAIEVE KQLHAIGGSN IMLICRPEYP KIEAEARSLG EEMGLVYDWK GIHFKEANME  780
DRQKIQEVLR DEEAIPTSSD WAVKLGINLY YSANLAKSPL YNKQMPYNRV IYRAFGCDSP  840
NDSPVMFNTC ERKQSHQKKI VVAGRWCGKV WMSKQVHPYL AHRVESQEAE EADRICSYHF  900
DEKHKAEPVG NSSRVEASKR KSSSLTDVTE SSNRRGEIPG EETNTKRPKH SQENNLRALE  960
TAVEVVVPSP AGTGLRVSSR IANRANKLKS KMEKEDVPSS RPKSNIKEKS SHASGQKSNV  1020
QEANANSSSH LRAMPPKQKA EAEAKKQIRT PKPPKQAVEY SCDIEGCSMS FRTKRDLSLH  1080
KSDICPVKGC GKKFFSHKYL LQHRKVHTDD RPLTCPWEGC NMAFKWPWAR TEHLRVHTGD  1140
RPYVCHEPGC AQTFRFVSDF SRHKRKTGHS VKKKKQAKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A6e-601060117323136Lysine-specific demethylase REF6
6a58_A6e-601060117323136Lysine-specific demethylase REF6
6a59_A6e-601060117323136Lysine-specific demethylase REF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539003.1_FGP001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0689520.0AK068952.1 Oryza sativa Japonica Group cDNA clone:J023001N18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621377.10.0lysine-specific demethylase JMJ705
SwissprotQ5N7120.0JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBLA0A0E0CBU50.0A0A0E0CBU5_9ORYZ; Uncharacterized protein
STRINGOGLUM01G45290.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53463246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-69relative of early flowering 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]