PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538986.1_FGP026
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 525aa    MW: 57076.9 Da    PI: 8.243
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538986.1_FGP026genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.51.1e-083173541954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yp+  ++  LA+++gL+ +qV++WF N R +
  KN538986.1_FGP026 317 FEHflHPYPNDVDKHILARQTGLSRSQVSNWFINARVR 354
                        554459******************************88 PP
2BELL98.84.2e-32171239472
               BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        +l+++ka++ls++eeVd+rY++y+eq+++v  sFeavag g+a++Yt+lA++a+SrhFrcL+da+++q+
  KN538986.1_FGP026 171 DLERRKARILSMVEEVDRRYRRYREQMRAVEVSFEAVAGGGAAQVYTKLAMRAMSRHFRCLRDALVGQV 239
                        6899**************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.9E-63103237IPR006563POX domain
PfamPF075263.2E-39109235IPR006563POX domain
PROSITE profilePS5007111.548295358IPR001356Homeobox domain
CDDcd000861.94E-11298359No hitNo description
SMARTSM003896.5E-9298362IPR001356Homeobox domain
SuperFamilySSF466895.99E-17299365IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-27301364IPR009057Homeodomain-like
PfamPF059202.5E-17315354IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MAAHHHHHEH HHLLDMSSPP NATGAIISSF DHAAGLLSLH DVAAAADHHH HHLRGGGGGG  60
GGLQLPSPWS QQQVSLSLYN NAAGAAAGSP PSSLVAHQQL AAAQPLFQVR GSKYLGPVKA  120
LLAEFCSLDV EAMAKQQRAP NPNPKIGKWD DVEGSGSWGN LSLMSSMDLL DLERRKARIL  180
SMVEEVDRRY RRYREQMRAV EVSFEAVAGG GAAQVYTKLA MRAMSRHFRC LRDALVGQVR  240
ALRKAMGESQ RDSGAGAGGV AAAPGATKGD TPRLRVLDQC LRQQRAFQQS GAVDNFPWRP  300
QRGLPERAVA VLRAWLFEHF LHPYPNDVDK HILARQTGLS RSQVSNWFIN ARVRLWKPMI  360
EDMYKEETKP ESSDGNNNNK LNPSAAGNKQ QHRDDDKNYT ATTAAASLVQ QSSYHLHLRS  420
SGNPNSSSLM IPAAAAASTS IDHHHDGSHQ LLGGHSYSSA AGLHHGHGGA VSLTLGLQQQ  480
QQQPFAASMM QQQSFMVEAA AEGEEDDVLP YRNLMESQLL HDFAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-15304361158Homeobox protein Meis1
4xrs_B1e-15304361158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538986.1_FGP026
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2188950.0AB218895.1 Oryza sativa Japonica Group mRNA for OsBEL protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641004.10.0homeobox protein BEL1 homolog
TrEMBLI1PYU40.0I1PYU4_ORYGL; Uncharacterized protein
STRINGORGLA06G0005600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63983547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.13e-86TALE family protein