PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538944.1_FGP015
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 309aa    MW: 32415 Da    PI: 7.9229
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538944.1_FGP015genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013526223
                       EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                       +C+ C ++F ++  L  H+r+H
  KN538944.1_FGP015  5 TCKLCYRRFGNPRALAGHMRSH 26
                       6********************9 PP
2zf-C2H211.60.00087172194123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++Cp C+k+F++   L  H  +H
  KN538944.1_FGP015 172 FQCPACKKVFRSYQALGGHRASH 194
                        89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.099426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974427IPR007087Zinc finger, C2H2
SuperFamilySSF576673.67E-7526No hitNo description
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PfamPF139120.0045626IPR007087Zinc finger, C2H2
SuperFamilySSF576673.67E-7167194No hitNo description
PfamPF139121.2E-11171196IPR007087Zinc finger, C2H2
PROSITE profilePS501579.286172194IPR007087Zinc finger, C2H2
SMARTSM003550.026172194IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280174194IPR007087Zinc finger, C2H2
SMARTSM0035586236256IPR015880Zinc finger, C2H2-like
PfamPF139123.8E-9236257IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MAKNTCKLCY RRFGNPRALA GHMRSHSVAA SRSQISSTSS ASTSVAVGDD DGGGDAKRPI  60
QGYVLREKPK RRVRLAESDF SDRESETEYY SSPPHGKRAN TGSGDVEQVS SVSDAATSEE  120
DVALSLMMLS RDTWPATPPP YRLRGAGYDD GSDGGAPPPA PAAAAAQKRT RFQCPACKKV  180
FRSYQALGGH RASHMRGGRG GCCAPPPNPP PSPATPLQPL PECDGGEEEG AKPHPHECPH  240
CFRVFASGQA LGGHKRSQLC SAAAAAASGD DLPATIKSNG FIDLNLPAPF DDVELSAVSD  300
PFLSSKPGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16773KPKRRVR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538944.1_FGP015
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066330.0AL606633.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010H02, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634603.21e-163zinc finger protein ZAT1
TrEMBLA0A0E0KTN01e-172A0A0E0KTN0_ORYPU; Uncharacterized protein
STRINGOPUNC04G18700.11e-173(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.11e-28C2H2-like zinc finger protein