PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538917.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 333aa    MW: 37592.9 Da    PI: 7.2183
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538917.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000175476323
                       ET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2  3 Cp..dCgksFsrksnLkrHirtH 23
                       C+   Cgk+F +   L++H  +H
  KN538917.1_FGP002 54 CSyeGCGKTFVDAGALRKHAHVH 76
                       77779**************9887 PP
2zf-C2H215.64.8e-0581105123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        y+C+   C+k F ++s LkrH   H
  KN538917.1_FGP002  81 YVCHyaGCDKKFLDSSKLKRHFLIH 105
                        9********************8877 PP
3zf-C2H212.90.00034111137123
                        EEET..TTT..EEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCg..ksFsrksnLkrHirtH 23 
                        ++Cp   Cg    Fs   nLk H++tH
  KN538917.1_FGP002 111 FVCPheGCGkvLAFSLDFNLKAHMKTH 137
                        89*******999**************9 PP
4zf-C2H213.50.00022143168123
                        EEET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                        ++C+   C ++F++ s L+ Hi+  H
  KN538917.1_FGP002 143 HVCKypECARRFTQESKLRAHIKQqH 168
                        789999****************9877 PP
5zf-C2H212.10.00058211236123
                        EEET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                        y+Cp   C k + + + L+ H+++ H
  KN538917.1_FGP002 211 YVCPydGCAKAYIHEYKLNLHLKKeH 236
                        99*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.3E-144778IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9285281IPR007087Zinc finger, C2H2
SMARTSM003550.00215276IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.03E-65377No hitNo description
PROSITE patternPS0002805476IPR007087Zinc finger, C2H2
SuperFamilySSF576675.98E-1076118No hitNo description
Gene3DG3DSA:3.30.160.601.3E-1379101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.003281105IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.15281110IPR007087Zinc finger, C2H2
PROSITE patternPS00028083105IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.3E-18102140IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.28111137IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.33E-9123169No hitNo description
Gene3DG3DSA:3.30.160.602.8E-6142164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.049143168IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.118143168IPR007087Zinc finger, C2H2
PROSITE patternPS000280145168IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.7E-8203233IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.18E-5207234No hitNo description
SMARTSM003550.012211236IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.85211241IPR007087Zinc finger, C2H2
PROSITE patternPS000280213236IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MWFIVHYHAR WDPLLAGFLN SMGEDRLSAL KSRDKEQEAE LAKPEPTTEV LFLCSYEGCG  60
KTFVDAGALR KHAHVHGERQ YVCHYAGCDK KFLDSSKLKR HFLIHTGEKN FVCPHEGCGK  120
VLAFSLDFNL KAHMKTHSAD NYHVCKYPEC ARRFTQESKL RAHIKQQHEK GGLQNPGGSA  180
TNRSGLADHS HNSHTPKPSA APPAPSADRP YVCPYDGCAK AYIHEYKLNL HLKKEHPNHY  240
QDAGAQAASS KMSKRRSKPA LTAKMPLPKV PKRRGYTEPY QPPVSVVEEH QWPRNVLYED  300
DSEETEEEGD NVGDGARYRA ASSDDDEETE DEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C5e-32451642114PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267273PKVPKRR
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538917.1_FGP002
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1037600.0AK103760.1 Oryza sativa Japonica Group cDNA clone:J033143G04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627689.10.0zinc finger transcription factor YY1 isoform X1
RefseqXP_015627691.10.0zinc finger transcription factor YY1 isoform X3
SwissprotQ2V3L33e-82YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A0E0NGA50.0A0A0E0NGA5_ORYRU; Uncharacterized protein
TrEMBLQ0E0H10.0Q0E0H1_ORYSJ; Os02g0551900 protein
STRINGORUFI02G21320.10.0(Oryza rufipogon)
STRINGOS02T0551900-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.32e-81C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]