PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538906.1_FGP009
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 374aa    MW: 41830.3 Da    PI: 4.6562
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538906.1_FGP009genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM38.24.2e-127613270128
                NAM  70 tgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +g+++  + k+gyWk  g+ +  +  ++  vg+k tL  y+g+ap+g++t Wvm+ey +
  KN538906.1_FGP009  76 NGENAIIKSKTGYWKVVGTVRIPT--STVIVGMKVTLDHYEGQAPSGKRTGWVMNEYLI 132
                        45555557889*******966554..5899***************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100518.15624153IPR003441NAC domain
SuperFamilySSF1019416.41E-2132153IPR003441NAC domain
PfamPF023653.4E-634130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MSAEIGSIFS RTIMSSKVPG LALLNTSISK SWSNEELVRF LAERKSTHSL PENVFVGMSI  60
SLIDPWNSDD PQSPKNGENA IIKSKTGYWK VVGTVRIPTS TVIVGMKVTL DHYEGQAPSG  120
KRTGWVMNEY LIEQNDEANL PQDYKNLCTI FFQGDDILNA GDKQICLDAN VPNERKEFYL  180
QYLAELEEQN AAWNNQAVCV NEQDVSSSKG LDGQKTSAAD DQSVNHAPSR EDYIELNDFL  240
NSDSSASTSE YSSQRTMISE EYFDSDAFLR EIRNDHNAAD EEHTDSKFSV AAASKSDCVV  300
ISPPEQGFVN NLDNHATIAG DSPQKSVQND KVDEHSRSMT LRHAILIRTG RLNRFMPDLL  360
IEHSQRRLQV LKQQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538906.1_FGP009
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0726820.0AK072682.1 Oryza sativa Japonica Group cDNA clone:J023135B15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614544.10.0protein ATAF2 isoform X1
TrEMBLA0A0E0IR100.0A0A0E0IR10_ORYNI; Uncharacterized protein
STRINGONIVA10G06600.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109162632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-14NAC domain containing protein 2