PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538834.1_FGP009 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 242aa MW: 24479.3 Da PI: 5.639 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.2 | 3.4e-09 | 61 | 100 | 11 | 55 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq KN538834.1_FGP009 61 LRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 100 6******************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.668 | 50 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.2E-8 | 60 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.27E-13 | 60 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.9E-13 | 60 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-6 | 61 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.04E-10 | 62 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0080147 | Biological Process | root hair cell development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MQPNARQMHG GGGRGGGGQD DFFDQMLSTL PAGGDHALYN GFGAAGMHGA AAMQPPPFGQ 60 LRRERIAERM KALQELVPNA NKTDKASMLD EIIDYVKFLQ LQVKVLSMSR LGGASAVAPL 120 VANMSSESNG NGNATSSSGN GEAANGSSNS DNNGGGTLRV TEQQVAKLME EDMGSAMQYL 180 QGKGLCLMPI SLATAISSAT SSLLLPRTGG GAGGSLHEGG NGTSPPLVNG AATGGDDAGG 240 KQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 11 | 17 | GGRGGGG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538834.1_FGP009 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003975 | 1e-173 | AP003975.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1004_E04. | |||
GenBank | AP004094 | 1e-173 | AP004094.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1695_H09. | |||
GenBank | AP014958 | 1e-173 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627343.1 | 1e-110 | transcription factor bHLH66 | ||||
Swissprot | Q9LSQ3 | 3e-62 | BH082_ARATH; Transcription factor bHLH82 | ||||
TrEMBL | A0A0D3FBK6 | 1e-118 | A0A0D3FBK6_9ORYZ; Uncharacterized protein | ||||
STRING | OBART02G35840.1 | 1e-119 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1419 | 37 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 2e-47 | LJRHL1-like 1 |
Publications ? help Back to Top | |||
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