PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538735.1_FGP007 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 259aa MW: 28308.2 Da PI: 10.2645 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 48.7 | 1.2e-15 | 185 | 210 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ + +tG C+yGd+C+FaHg KN538735.1_FGP007 185 FKTELCNKWEETGDCPYGDQCQFAHG 210 79***********************9 PP | |||||||
2 | zf-CCCH | 19.3 | 2e-06 | 223 | 248 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+ Cr +++ C+yG rC+F H+ KN538735.1_FGP007 223 YKTAVCRMVLAGDVCPYGHRCHFRHS 248 9**********55**********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 7.7E-19 | 179 | 217 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-10 | 181 | 216 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5E-9 | 184 | 211 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.413 | 184 | 212 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-12 | 185 | 210 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-8 | 218 | 250 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.7E-11 | 218 | 248 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.5E-5 | 222 | 249 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.009 | 222 | 250 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051511 | Biological Process | negative regulation of unidimensional cell growth | ||||
GO:1901347 | Biological Process | negative regulation of secondary cell wall biogenesis | ||||
GO:0003729 | Molecular Function | mRNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MATGEHKSIL PASPNGKSTH LKVHPVRLAV AAAGRKETHL AHAPTYAAAL RRENAELRVT 60 NSDLARRLAL LSGKHTAAVA VADEIRRLRL GEQKVAADTK ERTPEKLAVL PKSISVRSTS 120 YLKLNQQSQA ATATPAAPNR KPRTSSNPTN PPSSRAYDGG KKGDEQKAQP ADSGAELEVY 180 NQGMFKTELC NKWEETGDCP YGDQCQFAHG VAELRPVIRH PRYKTAVCRM VLAGDVCPYG 240 HRCHFRHSLT PAERLLLRS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 2e-21 | 185 | 248 | 4 | 67 | Butyrate response factor 2 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00383 | ampDAP | Transfer from AT1G68200 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538735.1_FGP007 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108658 | 0.0 | AK108658.1 Oryza sativa Japonica Group cDNA clone:002-148-E11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631647.1 | 1e-137 | zinc finger CCCH domain-containing protein 9 isoform X2 | ||||
Swissprot | A2ZVY5 | 1e-136 | C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9 | ||||
TrEMBL | A0A0E0C681 | 1e-137 | A0A0E0C681_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0JLQ7 | 1e-137 | A0A0E0JLQ7_ORYPU; Uncharacterized protein | ||||
STRING | OMERI01G23770.1 | 1e-137 | (Oryza meridionalis) | ||||
STRING | OPUNC01G24490.1 | 1e-137 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2775 | 37 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 2e-49 | C3H family protein |