PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538687.1_FGP097
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 677aa    MW: 74301.8 Da    PI: 9.3858
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538687.1_FGP097genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.61.7e-06154174425
                        ---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                        + C f+a+ G Ck G +C+F H
  KN538687.1_FGP097 154 RTCTFYAQ-GRCKNGKSCTFLH 174
                        78******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.9E-5149175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6150175IPR000571Zinc finger, CCCH-type
SMARTSM003560.0043150176IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.605150177IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MAAGAWWSMM GFIWLAAWLS GPFTNFPFSL PNFSTIFSTN HAVTPQPSHM VSQRLTPQHY  60
SAKAVPNIPT SQGFVGVIAA EKKPALQLRG DERYQKKAGN DPVPPTIDDT SKTGGLHLHG  120
GHVSQSPPDS NALSSQRFGS SSPGGDMKNK TRKRTCTFYA QGRCKNGKSC TFLHEGEVSG  180
SDNQVYGNHG GTGEGSEIQH PSSSKERQFK NSAGSSQHEI YRTLVHAYGE DNRGLTHPVV  240
KHSCHMLKAS HGFKIGGSLT ANPTNEVVQL PVVQEKNHEP YFMGHQISLG TNSCLNDMGA  300
YSRLRLDGGK LQFEVAKGDS PRDSHLSRSY LEKNPLKPDY RYQPFDSTIS LDPHQYSKKS  360
SAYGGATENL PHKHQEEKSS SHVSYSLNSY TGFRKQGHDS SDFFLVNQSL RATSHHGTLP  420
LRQLTPDKDA SHHQGADFDK GGTSRSTLLV SSSSQPVVAS AGKLSPIKDE VWITSVPFVP  480
SFNFPDFPGS TSPSKSQYDP LVDSIDPPKV ESLNNLKTSN ISCSISSQHV DTNVIRGGSL  540
EKPLTFADKL ARNVSAKGSN DFGLISYDRG HSSSLDGDNR VKTCERKNDA SLNNEKSDFR  600
FHLVEHVKEL VKPIWKEGNL SKEAHKLIVK KSVDKIFASL EPNQMPETEK AITTYITASA  660
PKIEKLVKAY VDRHRTS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN538687.1_FGP097
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640223.10.0zinc finger CCCH domain-containing protein 36
SwissprotQ75K810.0C3H36_ORYSJ; Zinc finger CCCH domain-containing protein 36
TrEMBLA0A0E0A1620.0A0A0E0A162_9ORYZ; Uncharacterized protein
STRINGOGLUM05G22800.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110102123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-14C3H family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]