PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KN538682.1_FGP214 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 246aa MW: 26829.9 Da PI: 10.5906 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.4 | 1.9e-14 | 14 | 58 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ I++ + ++Rt+ q+ s+ qky KN538682.1_FGP214 14 PWTEEEHRTFLAGLEKLGKGDWRGISKNFVTTRTPTQVASHAQKY 58 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.023 | 6 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-17 | 9 | 63 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-10 | 11 | 61 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 8.2E-18 | 12 | 62 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 2.77E-10 | 14 | 59 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.3E-12 | 14 | 57 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.0E-12 | 14 | 58 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MAWLLKFICR TAVPWTEEEH RTFLAGLEKL GKGDWRGISK NFVTTRTPTQ VASHAQKYFL 60 RQTNPNKKKR RSSLFDMMAT DMSPAPNCPV LPPSMGKLHD MVAMTKQLQN SSLEGVSSSS 120 TVNLAPQVAR DLPPPIPSFK ATNVDSSLSK MNHMDGFLRA PMLFRPIPRI AEGASSSTPA 180 TASIADLEFQ ANLTACSNAL FASPRRKPKK ADPPAEKDLD LTVAPPSQQT RASISSQNAV 240 GVIQVV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 66 | 70 | KKKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KN538682.1_FGP214 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106331 | 0.0 | AK106331.1 Oryza sativa Japonica Group cDNA clone:002-101-F07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648291.1 | 1e-171 | transcription factor MYBS3-like isoform X1 | ||||
TrEMBL | A0A0P0XBW5 | 1e-170 | A0A0P0XBW5_ORYSJ; Os08g0151000 protein | ||||
STRING | OS08T0151000-00 | 1e-171 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5858 | 36 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47390.1 | 3e-35 | MYB_related family protein |