PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN47400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 162aa MW: 18517.1 Da PI: 10.2999 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.6 | 3.4e-09 | 21 | 44 | 23 | 47 |
-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47 W++Ia +++ gRt++++k++w++y KHN47400.1 21 VWSLIAGRLP-GRTPNDVKNYWNTY 44 7*********.************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.175 | 1 | 49 | IPR017930 | Myb domain |
CDD | cd00167 | 1.15E-6 | 12 | 45 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-11 | 13 | 51 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.33E-7 | 18 | 50 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.9E-7 | 19 | 44 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MFIKHFPKEN NKLAEKEDPK VWSLIAGRLP GRTPNDVKNY WNTYIRRKVS SSHKVVINEK 60 QKKTTVKPHV VIKPKARTFS RPSPSGLRGS SVLREEGGES GAKHCSTHHQ ACAASSEYIN 120 NWSTDQWWKT MMHDKGDNLD NNQCLLAYQD EVGKLKFIIL LS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN47400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT090299 | 0.0 | BT090299.1 Soybean clone JCVI-FLGm-4K7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003541690.1 | 1e-99 | transcription factor MYB111 | ||||
Refseq | XP_028186595.1 | 1e-99 | transcription factor MYB111-like | ||||
TrEMBL | A0A445I8I0 | 8e-99 | A0A445I8I0_GLYSO; Uncharacterized protein | ||||
STRING | GLYMA13G29891.1 | 2e-99 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16722 | 7 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56650.1 | 6e-12 | production of anthocyanin pigment 1 |
Publications ? help Back to Top | |||
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