PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN46294.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 709aa    MW: 77238.4 Da    PI: 5.9825
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN46294.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07275295526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C++f++ G C++Gd C +aHg
  KHN46294.1 275 PCPDFRK-GACRRGDMCEYAHG 295
                 8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.205.8E-178146IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484039.79E-179138IPR020683Ankyrin repeat-containing domain
SMARTSM0024838001039IPR002110Ankyrin repeat
CDDcd002044.20E-1515135No hitNo description
SMARTSM002480.0085787IPR002110Ankyrin repeat
PROSITE profilePS5029716.01657164IPR020683Ankyrin repeat-containing domain
PfamPF127968.9E-857126IPR020683Ankyrin repeat-containing domain
SMARTSM002480.001492124IPR002110Ankyrin repeat
PROSITE profilePS5008811.03392127IPR002110Ankyrin repeat
SMARTSM003564.0E-6270296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4274297IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-5275295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582275297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-4303333IPR000571Zinc finger, CCCH-type
SMARTSM0035630305328IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MNNLTIETED SFASLLELAA NNDVEGFKRM IERDPSCVDE VGLWYSRQKG SRRMVNELRT  60
PLMVAATYGS IDILDLILSL SGCDINKPCG LDKSTALHCA ASGGSENVVD VVILLLAAGA  120
DPNSVDGNGH RPVDVIVVPP KHESVRNNLE ALLQTDDSIA VCNLRVITAP SNAYSPPLST  180
SSENGSPSAP DFQLKSKLND GFISSASDKK EYPVDPSLPD IKNSIYSTDE FRMYSFKVRP  240
CSRAYSHDWT ECPFVHPGEN ARRRDPRKYH YSCVPCPDFR KGACRRGDMC EYAHGVFECW  300
LHPAQYRTRL CKDGTSCSRR VCFFAHIAEE LRPLYVSTGS AVPSPRSSTS AMDFAAAMNM  360
LPGSPSSMSV MSPSRFTPPM SPSANGMSHP SVAWPQPNVP ALHLPGSNIY SSRLRSSFNA  420
RDIPVDDFDL LPDYDVQQQL LNEFSCLSKQ PMNSNAMNRS GRIKTLTPSN LDDLFSSESS  480
SPRFADPALA SAVFSPTHKS AFLNQFQQQQ SLLSPVNTNF SSKNVENPLL HGASFGGQSS  540
GRMSPRNVEP ISPMSSRISV LVQHEKQQQF RSLSSRELGS NSATVAAAAA AAGSPANSWS  600
KWGSSNGTLD WAVNADELGK LRRSSSFEHG NNSEEPDFSW VQSLVKESPS EIKENPTMMT  660
TTTTISSVAA AGSSSEVSNM STQMDAVDHA VLGAWLEQMQ LDQLVAQQN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN46294.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006589016.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_028184182.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A0B2SP390.0A0A0B2SP39_GLYSO; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A445IKF60.0A0A445IKF6_GLYSO; Zinc finger CCCH domain-containing protein 30
TrEMBLI1LAB50.0I1LAB5_SOYBN; Uncharacterized protein
STRINGGLYMA10G21950.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]