PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN46110.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 527aa    MW: 57546.9 Da    PI: 7.732
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN46110.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.21.7e-33237294260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh+k
  KHN46110.1 237 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGQITEIVYKGTHNHPK 294
                 8****************************************.***************85 PP
2WRKY106.81.1e-33408466159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d ++v++tYeg+Hnh+
  KHN46110.1 408 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHD 466
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-28230295IPR003657WRKY domain
SuperFamilySSF1182901.11E-25235295IPR003657WRKY domain
SMARTSM007741.4E-36236294IPR003657WRKY domain
PROSITE profilePS5081123.778237295IPR003657WRKY domain
PfamPF031067.9E-26237293IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.4E-38393468IPR003657WRKY domain
SuperFamilySSF1182901.05E-29400468IPR003657WRKY domain
PROSITE profilePS5081138.147403468IPR003657WRKY domain
SMARTSM007741.2E-39408467IPR003657WRKY domain
PfamPF031064.4E-26409466IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MASSSGSLDT SASANSFTNF TFSTHPFMTT SFSDLLASPT DNNKPPHGGG GGLSERTGSG  60
VPKFKSTPPP SLPLSPPPIS PSSYFSIPPG LSPAELLDSP VLLNSSNILP SPTTGAFVAR  120
SFNWKSSSGG NQRIVKEEDK GFSNFSFQTQ QGPPASSTAT YQSSNVTVQT QQPWSYQETT  180
KQDNFSSGKS MMKTEKSSSM QSFSPEIASV QNNHSNGFQS DYGNYPPQSQ TLSRRSDDGY  240
NWRKYGQKQV KGSENPRSYY KCTYPNCPTK KKVERSLDGQ ITEIVYKGTH NHPKPQNTRR  300
NSSNSSSLAI PHSNPISAEI PDQSYATHGS GQMDSAATPE NSSISIGDDD FEQSSQKCKS  360
GGDEYDEDEP DAKRWKIEGE NEGMSAPGSR TVREPRVVVQ TTSDIDILDD GYRWRKYGQK  420
VVKGNPNPRS YYKCTHPGCP VRKHVERASH DLRAVITTYE GKHNHDVPAA RGSSSDSTFD  480
GSVLVVQQQN RLGVGHHDLH LDSSFTSKHE TATVVDVHPN ARVWPVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-37237469878Probable WRKY transcription factor 4
2lex_A4e-37237469878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN46110.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5877000.0KM587700.1 Glycine max clone GmWRKY42 WRKY mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001348302.10.0WRKY transcription factor 39
SwissprotQ6IEQ71e-142WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLI1JHI80.0I1JHI8_SOYBN; Uncharacterized protein
STRINGGLYMA02G39870.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-107WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  4. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  5. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]