PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN44907.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NF-YB | ||||||||
Protein Properties | Length: 231aa MW: 26511.9 Da PI: 5.0572 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 100.1 | 1.8e-31 | 24 | 113 | 6 | 95 |
NF-YB 6 rflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 +Pi+n+++im ++l +n ++s d+ +++q+ ++++i fvt +a d+cq e rk +n++dllwa+ +lGf+dyvepl++++++yr++eg KHN44907.1 24 SKMPITNMMKIMSQILLNNVQVSYDTMDMIQQSATKYINFVTRKAKDRCQSECRKIMNAEDLLWAIEELGFNDYVEPLTTFIQRYRNIEG 113 579*************************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.7E-28 | 23 | 113 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.0E-13 | 25 | 89 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 8.18E-22 | 25 | 113 | IPR009072 | Histone-fold |
PRINTS | PR00615 | 9.6E-10 | 53 | 71 | No hit | No description |
PRINTS | PR00615 | 9.6E-10 | 72 | 90 | No hit | No description |
PRINTS | PR00615 | 9.6E-10 | 91 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MAISLPINSN NGDRVPNLVL RDKSKMPITN MMKIMSQILL NNVQVSYDTM DMIQQSATKY 60 INFVTRKAKD RCQSECRKIM NAEDLLWAIE ELGFNDYVEP LTTFIQRYRN IEGVDLFTTH 120 KEPISHIENH GPSLGPEPNL MSTLEMLHPP QPPQVNSSQP KFSIIPNTNL EMLYPNEMSS 180 TKIHLVLVVQ MMFSTTLMFL LSSIMINIEM IIEEIQLQLT IMAMDYDIGN K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 2e-26 | 17 | 110 | 3 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN44907.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014628426.1 | 2e-67 | nuclear transcription factor Y subunit beta | ||||
TrEMBL | A0A0B2SKU8 | 1e-169 | A0A0B2SKU8_GLYSO; Nuclear transcription factor Y subunit B-9 | ||||
TrEMBL | K7L2H0 | 1e-169 | K7L2H0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G29695.1 | 1e-169 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF591 | 34 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21970.1 | 6e-31 | NF-YB family protein |
Publications ? help Back to Top | |||
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