PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN44406.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | Trihelix | ||||||||
Protein Properties | Length: 296aa MW: 34028.3 Da PI: 6.6353 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 65.3 | 1.4e-20 | 1 | 67 | 17 | 86 |
trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 m+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k+++++ s +++y+++++ KHN44406.1 1 MDALFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGS---GSAKMSYYKEID 67 577899***********************************************84...556899***997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 3.97E-21 | 1 | 49 | No hit | No description |
Pfam | PF13837 | 2.9E-17 | 7 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MDALFNTSKS NKHLWEQISA KMREKGFDRS PTMCTDKWRN LLKEFKKAKH QDRGSGSAKM 60 SYYKEIDEIL RERSKNVQYK SPTPPPKVDS FMQFADKGID DTSISFGPVE ATGRPTLNLE 120 RSLDHDGHPL AITTADAVAA SGVPPWNWRE TPGNGGESQS CCGRVISVKW GDYTRRIGID 180 GTPEAIKEAI RAAFRLRTKR TFWLEDEDQI IRSIDREMPL GNYTLHIDEG MAIKLPLYDE 240 PDHIPVHTED KIFYTEDDFR DFLTRRGWIC LREFDSYRNI DNMDDLRPGA IYRGVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 8e-38 | 1 | 65 | 22 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00004 | PBM | Transfer from 920224 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN44406.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU285265 | 0.0 | EU285265.1 Glycine max GT-1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003538569.1 | 0.0 | trihelix transcription factor GT-1 isoform X1 | ||||
Refseq | XP_028197355.1 | 0.0 | trihelix transcription factor GT-1-like isoform X1 | ||||
Swissprot | Q9FX53 | 1e-165 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | A0A0B2QWD1 | 0.0 | A0A0B2QWD1_GLYSO; Trihelix transcription factor GT-1 | ||||
TrEMBL | A0A0R0HW24 | 0.0 | A0A0R0HW24_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445HHW1 | 0.0 | A0A445HHW1_GLYSO; Trihelix transcription factor GT-1 | ||||
STRING | GLYMA11G37390.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6817 | 32 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13450.1 | 1e-167 | Trihelix family protein |
Publications ? help Back to Top | |||
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