PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN44071.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 265aa MW: 29736.2 Da PI: 9.1902 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.00029 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C++sFs+ L H++ H KHN44071.1 4 HKCKLCSRSFSNGRALGGHMKAH 26 79******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 7.0E-8 | 3 | 27 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.33E-5 | 3 | 29 | No hit | No description |
PROSITE profile | PS50157 | 10.99 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.028 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 190 | 163 | 183 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 3.53E-5 | 201 | 227 | No hit | No description |
Pfam | PF13912 | 3.4E-12 | 203 | 227 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.598 | 204 | 226 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.2 | 204 | 226 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 206 | 226 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MDRHKCKLCS RSFSNGRALG GHMKAHLATL PLPPKPHSYS SSSDSEQEQE QESLNYALRE 60 NPKKSFRVAD PEDRESETES RNPTRQRSKR NRKSTMPKLT PPPHPEPEPL SSVSDTSPEE 120 DVAMCLMMLS RDTWQQHKHA NAATPKRRCS SGSEIKKNVR GNHLCHKCHK SFRSSRAFGS 180 HRNVCCPREE GQNNYNNNRS TKVFECPFCY KVFGSGQALG GHKRSHLIPS SSSTVNDSVK 240 LKHSFIDLNL PAPAEDDDLS VVSDA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 84 | 89 | RQRSKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN44071.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC967126 | 1e-146 | KC967126.1 Glycine max C2H2-type zinc finger protein 5 (ZFP5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003525852.1 | 0.0 | zinc finger protein ZAT4 | ||||
Refseq | XP_028231766.1 | 0.0 | zinc finger protein ZAT4-like | ||||
TrEMBL | A0A0B2SBE5 | 0.0 | A0A0B2SBE5_GLYSO; Zinc finger protein ZAT9 | ||||
TrEMBL | I1K0Q6 | 0.0 | I1K0Q6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G04690.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45120.1 | 1e-39 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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