PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN40076.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 690aa    MW: 75096.3 Da    PI: 6.1442
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN40076.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.6e-07270290526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C+ f++ G C+ Gd C +aHg
  KHN40076.1 270 PCPEFRK-GSCSKGDACEYAHG 290
                 8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002044.36E-1519151No hitNo description
Gene3DG3DSA:1.25.40.201.9E-1631178IPR020683Ankyrin repeat-containing domain
PfamPF127961.2E-769141IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.26E-1570150IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.8273151IPR020683Ankyrin repeat-containing domain
SMARTSM002483.273103IPR002110Ankyrin repeat
SMARTSM002484.0E-5108140IPR002110Ankyrin repeat
PROSITE profilePS5008812.957108143IPR002110Ankyrin repeat
SMARTSM003568.6E-5265291IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-5270290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.094270292IPR000571Zinc finger, CCCH-type
SMARTSM0035616300323IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.991300324IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MCGVSKGKPS QFGLVMEEYA KEGMHHIISA LLEFSAADDL VSFKDAVEKE GHDIDGVGFW  60
YGRCVASKKI GYEERTPLMV ASMFGSLGVS TYILSTGSVD VNWASRSDGA TALHCAVAGG  120
SAASIEVVKL LLDASADVNA IDANGNRPID LIGSVTNSIF SQRSRVLQAL LEGTSDADQA  180
CLALPEVIDQ IEEQRQDMTT PRVSKDYPID LSLPDIKNGI YGTDEFRMYT FKVKPCSRAY  240
SHDWTECPFV HPGENARRRD PRKYHYSCVP CPEFRKGSCS KGDACEYAHG IFECWLHPAQ  300
YRTRLCKDES GCTRRVCFFA HKPEELRPLY ASTGSAIPSP RSYSASASAL EMGSVSPIAL  360
GSPSVLMPPT STPPLTPSGA SSPIAGSMWS QSNVSVPTLQ LPKSRLKTAS TARDIDLDIE  420
LLGLETHRRR QQLMMDEISA LSSPNWKNSM PNSPSFHVPL SDHTELNRLS GVKPANLEDM  480
FGSLDPSILS KYHGISLDVA GTQLQSPTGI QMRQNVNQQL GGYSSSLSTS NVIGSRSFRL  540
DQSGEAATVA LNPRAAAFAK RSQSFIERSV VNHHSEIPSP NPSTFSNWGS PGGKLDWAIN  600
GEELNKLRKS ASFGFRSSSS PLTKASNKIS ANVDDEPDVS WVNSLVKDAP PESGEYSVED  660
HRKLLQCHNG TDAIPAWLEQ LYLDQEQMVA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN40076.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5877020.0KM587702.1 Glycine max clone GmC3H3 C3H zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028200453.10.0zinc finger CCCH domain-containing protein 66-like
RefseqXP_028200454.10.0zinc finger CCCH domain-containing protein 66-like
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A445H7Z70.0A0A445H7Z7_GLYSO; Zinc finger CCCH domain-containing protein 66
STRINGGLYMA14G37330.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]