PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN39873.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bZIP

Protein Properties

Length: 268aa MW: 29274.9 Da PI: 6.4297

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN39873.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	27	9.6e-09	87	137	1	51
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 ek++ +r N+eA r++R++Kka+ + Le++v +L a N+ L k+l+ KHN39873.1 87 EKKSSSKKRPLGNKEAVRKYREKKKARAASLEDEVVKLRALNQHLMKKLQG 137 567777899999***********************************9974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	7.9E-13	85	155	No hit	No description
SMART	SM00338	5.6E-9	87	154	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	5.6E-12	90	144	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.0E-6	94	137	No hit	No description
CDD	cd14686	3.87E-11	95	146	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071294	Biological Process	cellular response to zinc ion
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MDDGELDFSN HEVFSSPNMG ELPSSGSMDS FFDELLKDTH ACTHTHTCNP PGPDFSHTHT 60 CYHVHTKIVP APEEDQVATD DTAESAEKKS SSKKRPLGNK EAVRKYREKK KARAASLEDE 120 VVKLRALNQH LMKKLQGQAA LEAEIARLKC LLVDIRGRIE GEIGSFPYQK TTTTTPNPVA 180 GSYVMNPCNL PCDDRVYCLH PDGRIGETAA LNGEEFDGCE FENLQCLASQ NLGLKDLRAC 240 GVGVGHTGSN VNSSALSKKR KGGTPFMP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN39873.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235419	0.0	AC235419.1 Glycine max strain Williams 82 clone GM_WBb0136G05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001237296.2	0.0	bZIP transcription factor bZIP121
Refseq	XP_006590381.1	0.0	bZIP transcription factor bZIP121 isoform X1
Refseq	XP_006590382.1	0.0	bZIP transcription factor bZIP121 isoform X1
Refseq	XP_014619019.1	0.0	bZIP transcription factor bZIP121 isoform X1
Refseq	XP_014619020.1	0.0	bZIP transcription factor bZIP121 isoform X1
Refseq	XP_028190347.1	0.0	basic leucine zipper 23-like
Refseq	XP_028190348.1	0.0	basic leucine zipper 23-like
Refseq	XP_028190350.1	0.0	basic leucine zipper 23-like
Refseq	XP_028190351.1	0.0	basic leucine zipper 23-like
Refseq	XP_028190352.1	0.0	basic leucine zipper 23-like
Swissprot	Q8GTS2	1e-107	BZP23_ARATH; Basic leucine zipper 23
TrEMBL	A0A445I098	0.0	A0A445I098_GLYSO; Basic leucine zipper 23 isoform E
STRING	GLYMA11G11540.4	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2567	32	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16770.1	9e-92	bZIP family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]