PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN38700.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 307aa    MW: 34780.2 Da    PI: 9.0181
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN38700.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.61.3e-07129151123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y C+ Cgk F+r  nL+ H+r H
  KHN38700.1 129 YFCQVCGKGFKRDANLRMHMRAH 151
                 78*******************99 PP
2zf-C2H211.40.00096259274621
                 TTEEESSHHHHHHHHH CS
     zf-C2H2   6 CgksFsrksnLkrHir 21 
                 Cg++Fsrk+ L+ Hi 
  KHN38700.1 259 CGTTFSRKDKLMGHIT 274
                 **************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.72E-6127154No hitNo description
SMARTSM003556.7E-4129151IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-7129154IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.193129156IPR007087Zinc finger, C2H2
PROSITE patternPS000280131151IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-7186191IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355170188221IPR015880Zinc finger, C2H2-like
SMARTSM0035528226248IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MRFTCQQMIS SSPSGTNTIN ELHQQQIDHG RLLPPSHHES NFINNNRGVP SNINIVSHIN  60
RGQSFLSNSI EGEASLDWFA ESYNNSNSGN NYFNPKDDEA ANIINNIMGE TSDDIIELDA  120
ADLLAKYSYF CQVCGKGFKR DANLRMHMRA HGEEYKTSAA LRNPMKKNNK KESNLLFLGA  180
EGSVTKRYSC PQQGCRWNQR HAKFQPLKSM ICAKNHYKRS HCPKMYMCNR CNQKQFSVLS  240
DLRTHEKHCG DYPKWQCSCG TTFSRKDKLM GHITLFAGHT PVPNINGMSS YMGKSEVQQN  300
NIAGGLR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN38700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150395e-85AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539188.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2
RefseqXP_028189311.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
SwissprotQ0WT241e-86STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A445I3900.0A0A445I390_GLYSO; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLI1LKY90.0I1LKY9_SOYBN; Uncharacterized protein
STRINGGLYMA11G19810.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.13e-79C2H2 family protein