PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN36206.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | LBD | ||||||||
Protein Properties | Length: 159aa MW: 17906.6 Da PI: 6.6207 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 40.6 | 7.4e-13 | 8 | 37 | 1 | 30 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkf 30 +CaaCk+lrrkC+++Cv+apyfp ++p++ KHN36206.1 8 PCAACKFLRRKCTQECVFAPYFPPDNPQRE 37 7*********************99996543 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 9.079 | 7 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.5E-11 | 8 | 37 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0004088 | Molecular Function | carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MSSSSNSPCA ACKFLRRKCT QECVFAPYFP PDNPQREQQE MFRSYEHQQQ QEFLRFSGGG 60 FDMGSASSAG GFSQVSPAAA SADQLSPSLA LGSFDNAYHM QQPQQEEPHH HHHHPHHIPL 120 EAQLLLPPQQ KQQTHHESQL PLHQQHSDNE ERRSVGPSC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN36206.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235183 | 1e-153 | AC235183.1 Glycine max strain Williams 82 clone GM_WBb0008G09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006573622.1 | 1e-62 | LOB domain-containing protein 36 | ||||
Refseq | XP_014631594.1 | 1e-62 | LOB domain-containing protein 36 | ||||
Refseq | XP_014631595.1 | 1e-62 | LOB domain-containing protein 36 | ||||
Refseq | XP_014631596.1 | 1e-62 | LOB domain-containing protein 36 | ||||
TrEMBL | I1J947 | 3e-61 | I1J947_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G39060.2 | 5e-62 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2353 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 7e-17 | ASYMMETRIC LEAVES 2-like 1 |
Publications ? help Back to Top | |||
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