PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN33440.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 485aa    MW: 53705.9 Da    PI: 8.5383
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN33440.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.41.3e-16136185155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  KHN33440.1 136 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHIAARAYDRAAIKFRG 185
                 78*******************......55************************998 PP
2AP240.19.3e-13228275152
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 
                 s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k
  KHN33440.1 228 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIK 275
                 89********.7******5553..2.26**********99*********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.94E-15136193IPR016177DNA-binding domain
PfamPF008471.5E-8136185IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-16137193IPR001471AP2/ERF domain
SMARTSM003803.0E-31137199IPR001471AP2/ERF domain
PROSITE profilePS5103217.583137193IPR001471AP2/ERF domain
CDDcd000189.49E-24137193No hitNo description
PfamPF008472.9E-8228276IPR001471AP2/ERF domain
CDDcd000186.96E-25228288No hitNo description
SuperFamilySSF541714.18E-16228288IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.7E-15229286IPR001471AP2/ERF domain
SMARTSM003804.6E-29229292IPR001471AP2/ERF domain
PROSITE profilePS5103214.974229286IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MLDLNLNAES TQNNESLVLL DKFPEASLGT SNSSVVNAEG SSNEDSCSTR AGDVFAFSFG  60
ILKVEGANEV VATATKELFP VSSENWQGQS STSSSQARKN LMDLPLDHQN GEVKVVQVQP  120
QPQVKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH IAARAYDRAA  180
IKFRGLDADI NFDLVDYEED LKQMKNLSKQ EFVHILRRHS TGFSRGSSKY RGVTLHKCGR  240
WEARMGQFLG KKYIYLGLFD SEVEAARAYD KAAIKCNRRE AVTNFEPSIY ESEMKPEAIN  300
EGGSHDLDLN LGIATPGHGP KENRGHLQFQ SIPYNMHPGR SSRMETNVNS VIGDPSLKRL  360
VVTEERPSVY STFFPNLERA ERMGIDPSKG VPNWAWQTNG QVNATPVPPF STAASSGFSI  420
SATFPSTAIF PTKSMNPIPQ SFCFTSHSTP GSNAPQFYYE VKSSQAPSQP LSCNTSINGS  480
PPHKF
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN33440.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028204827.10.0ethylene-responsive transcription factor RAP2-7-like isoform X1
SwissprotQ9SK031e-107RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A445GP240.0A0A445GP24_GLYSO; Ethylene-responsive transcription factor RAP2-7 isoform A
STRINGGLYMA15G04930.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-118related to AP2.7
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]