PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN33341.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 447aa    MW: 50841 Da    PI: 6.1349
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN33341.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix68.51.3e-21116212185
    trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdql 85 
                 +Wt++ v++Li++++ ++++   g            +kk++W+ vsk m  +g+++sp+qC++k+++lnkryk+++++ +++t ++++++ ++ d++
  KHN33341.1 116 KWTDNVVRLLITVVSCVGDDGTIGGmdchkrksgvlQKKGKWKTVSKIMIGKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGTcCQVVENPVLMDSM 212
                 7**************888777765444466667777**********************************************857888888877777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.0E-18114239No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MNSSGLGGGF LSGPSGEILD LESPFHRQQH TQLGHPSITG QQHMNMMSGL ESDHPIGLIE  60
VKSLNAALNF GKGKAVAPSN SNELSEEDEP SYAEEGNCEN LDGGKSKKGS PWQRMKWTDN  120
VVRLLITVVS CVGDDGTIGG MDCHKRKSGV LQKKGKWKTV SKIMIGKGCH VSPQQCEDKF  180
NDLNKRYKRL NDILGRGTCC QVVENPVLMD SMPNLSAKMK DDVRKILSSK HLFYKEMCAY  240
HNGQRIPNSH ELDLQGYSLE HGRDSRDNNG SEDEDEDNND SEDDESDDEI NINAHEDGGR  300
MQQLCDRNKL SEEDVHFGPQ TSRMDKFEVE MARVFQDPTK SLHEQREWIK IQMLQLQEQN  360
ISYQAQALEL EKQRLKWLRY CSKKDRELEK LRLENKRMKL ENERRILKLK QKELEADFST  420
SEMSLDPASL GINRPQGREH ISLGRQQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN33341.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028202253.10.0uncharacterized protein LOC114386447
TrEMBLA0A445GNQ90.0A0A445GNQ9_GLYSO; Uncharacterized protein
STRINGGLYMA15G03850.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105463240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.11e-73
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]