PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN30711.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 257aa MW: 30197.8 Da PI: 8.8863 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.5 | 7.3e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd ll+++vk +G g+W+++ar g++R +k+c++rw +yl KHN30711.1 14 KGPWTSEEDRLLIQYVKFHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.3 | 1.1e-15 | 68 | 111 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g T++E+ ++ ++++++G++ W+tIar ++ gRt++++k++w+++ KHN30711.1 68 GHITPQEESIIQELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 111 667******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.366 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.4E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-16 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.6E-24 | 15 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.52E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 18.546 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-13 | 67 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-24 | 68 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.79E-9 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MGWSVIIEEE GWRKGPWTSE EDRLLIQYVK FHGEGRWNSV ARLAGLKRNG KSCRLRWVNY 60 LRPDLKKGHI TPQEESIIQE LHARWGNRWS TIARSLPGRT DNEIKNYWRT HFKKKTKTPS 120 DAAEKARIRS SRRQQFQQQQ QQLKQQQVQQ QQQQQQQFQF NLDMKGIINL LEENNHRVPS 180 ISQEAQEMAS MYPNTSEQQD YFYSMFNVND NNVSAPECLN EEILWDGLWN LDDVLCNFNA 240 ASATSKASLH NLVAPFC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-27 | 14 | 116 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in photomorphogenesis in the light. May act downstream of the light receptor network and directly affects transcription of light-induced genes. In darkness, its probable degradation prevent the activation of light-induced genes. Required to activate expression of PAL. Acts redundantly with MYB24 and MYB57 to control stamen filament elongation in the late developed flowers. Contributes with MYB24 to induction of MYB108 by jasmonate. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:11967090, ECO:0000269|PubMed:16805732, ECO:0000269|PubMed:19091873, ECO:0000269|PubMed:19325888, ECO:0000269|PubMed:21447791}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN30711.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by jasmonate. {ECO:0000269|PubMed:16805732}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT097047 | 0.0 | BT097047.1 Soybean clone JCVI-FLGm-15J22 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003536262.1 | 0.0 | myb-related protein 305 | ||||
Refseq | XP_028184030.1 | 0.0 | myb-related protein 305-like | ||||
Swissprot | Q9LK95 | 5e-53 | MYB21_ARATH; Transcription factor MYB21 | ||||
TrEMBL | A0A0B2R878 | 0.0 | A0A0B2R878_GLYSO; Transcription factor MYB21 | ||||
STRING | GLYMA10G33450.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1182 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 3e-80 | myb domain protein 305 |