PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN30131.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 439aa MW: 49962 Da PI: 6.1339 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 67.9 | 2e-21 | 108 | 204 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdql 85 +Wt++ v++Li++++ ++++ g +kk++W+ vsk m +g+++sp+qC++k+++lnkryk+++++ +++t ++++++ ++ d++ KHN30131.1 108 KWTDNVVRLLITVVSCVGDDGTIGGmdghkrksgvlQKKGKWKMVSKIMIGKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGTcCQVVENPVLMDSM 204 7**************777777765444445556677**********************************************857888888877777 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 7.8E-18 | 106 | 231 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 439 aa Download sequence Send to blast |
MSSSGLGGGI LDLESPFHRH QHTQLGQQSI TGQQHINIMS GLESDHPIGL IEVKSLNVAL 60 NFGKAKALAP SNSNELSEED EPSYAEEGNC ENLDGGNSKK GSPWQRMKWT DNVVRLLITV 120 VSCVGDDGTI GGMDGHKRKS GVLQKKGKWK MVSKIMIGKG CHVSPQQCED KFNDLNKRYK 180 RLNDILGRGT CCQVVENPVL MDSMPNLSAK MKDDVRKILS SKHLFYKEMC AYHNGQRIPN 240 SHELDLPGYS LEHGRDSRDN NGSEDEDEDN NDSEDDESDD EINTNAHEDG GRMQELCDRN 300 KLSDEDVHFG PQTSRMDKFE VEMARVFQDP TKLLREQREW IKIQMLQLQE QNISYQAQAL 360 ELEKQRLKWL RYCSKKDREL GKLRLENKRM KLENEHRILK LKQKELEADF STSEMSLDPA 420 SLGINRTQGR EHISLGRQQ |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN30131.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028189108.1 | 0.0 | uncharacterized protein LOC114375511 | ||||
TrEMBL | A0A445IE21 | 0.0 | A0A445IE21_GLYSO; Uncharacterized protein | ||||
STRING | GLYMA13G41550.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10546 | 32 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G21200.1 | 3e-69 | sequence-specific DNA binding transcription factors |
Publications ? help Back to Top | |||
---|---|---|---|
|