PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN29278.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C3H | ||||||||
Protein Properties | Length: 267aa MW: 28773.1 Da PI: 7.3343 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 39.4 | 1e-12 | 129 | 154 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ C+F+H++ KHN29278.1 129 DQPECQFYMKTGDCKFGAVCRFHHPR 154 689*********************96 PP | |||||||
2 | zf-CCCH | 39 | 1.4e-12 | 174 | 200 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ KHN29278.1 174 PGEPLCVFYSRYGICKFGPSCKFDHPM 200 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.624 | 127 | 155 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.0E-5 | 127 | 154 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.3E-9 | 129 | 154 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.15E-6 | 130 | 156 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.9E-5 | 133 | 155 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-7 | 173 | 200 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.821 | 173 | 201 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-9 | 175 | 200 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.77E-6 | 176 | 200 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.8E-4 | 178 | 198 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016740 | Molecular Function | transferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MVLSMRSSPV YPTVHSPTTP GQQSYATGIT NWSSSSYIPS PRWQGPSSYA PLILPQGMVS 60 VPGWSAYSGQ MGSDSPQQTM GNGQSYGTSR QSEPANSGSQ GAYSQFRSGS VPVGFYALQR 120 ENIFPERPDQ PECQFYMKTG DCKFGAVCRF HHPRERMIPA PDCVLSPIGL PLRPGEPLCV 180 FYSRYGICKF GPSCKFDHPM GVFTYNISAS PSADAPGRRM LGSSSGTSAL NLSSEGLVES 240 GSANPRRLSL SETRQIPSGD DNIDEEG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN29278.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003534518.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X2 | ||||
Refseq | XP_028247762.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X2 | ||||
Swissprot | Q9SWF9 | 1e-170 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | I1L6B2 | 0.0 | I1L6B2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G38650.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5321 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 3e-86 | zinc finger protein 1 |
Publications ? help Back to Top | |||
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