PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN29218.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 390aa    MW: 43747.8 Da    PI: 7.1583
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN29218.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.79.5e-096181526
                --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                 C f+++ G C yG+rC++ H+
  KHN29218.1 61 VCTFYQK-GVCAYGSRCRYDHV 81
                5******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00312954IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-63253IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0843355IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4275683IPR000571Zinc finger, CCCH-type
SMARTSM003560.00295782IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-55980IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-46180IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-66181IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.77168195IPR000571Zinc finger, CCCH-type
SMARTSM003560.12169194IPR000571Zinc finger, CCCH-type
SuperFamilySSF578506.8E-13225301No hitNo description
Gene3DG3DSA:3.30.40.102.4E-9230296IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001627.78E-4236296No hitNo description
SMARTSM001848.3E-6237294IPR001841Zinc finger, RING-type
PfamPF000971.1E-6237294IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.017237295IPR001841Zinc finger, RING-type
PROSITE patternPS005180261270IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.042324352IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.516324353IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MVMTGNKPFL EVITMLNSVV GRRAKFGIDI LFLCKFFAHG ACLKGEHCEF SHDWKDPPNN  60
VCTFYQKGVC AYGSRCRYDH VKASREQSSA PSSSVIEPQT LVSDTVAFGN TRAASNGVAT  120
GAEFSLSSSP YLLPSEPAWN RELVWNQEFG YHEPLWEDNV GQSIITSPSE LSICSFAGAG  180
NCPRGEKCPH IHGDLCPTCG KHCLHPFRPE EREEHMKTCE NKRKHLEALK QSQEIECSVC  240
LEHVLSKPTA AECKFGLLSE CDHPFCISCI RNWRSSNPTL GMDVNSTLRA CPICRKLSYF  300
VIPSVIWYST TEEKQEIINN YKAKLKSIDC KHFDFGEGNC PFGTSCFYKH AFRDGRLEQV  360
VLRHLGAAEG DTVIAKDIRL SDFLSNMHLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN29218.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028243960.10.0putative RING-type E3 ubiquitin transferase C3H69 isoform X1
RefseqXP_028243961.10.0putative RING-type E3 ubiquitin transferase C3H69 isoform X1
SwissprotE0X9N41e-169C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A445JF300.0A0A445JF30_GLYSO; Putative RING-type E3 ubiquitin transferase C3H69 isoform A
STRINGGLYMA08G16340.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102113340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-155C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]