PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN29050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 306aa MW: 34648.7 Da PI: 9.2867 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22.1 | 4e-07 | 116 | 137 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C+ Cgk F+r nL+ H+r H KHN29050.1 116 FCEVCGKGFTRDANLRMHMRAH 137 6*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.99E-6 | 113 | 141 | No hit | No description |
SMART | SM00355 | 0.0018 | 115 | 137 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.508 | 115 | 142 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12874 | 6.8E-4 | 116 | 135 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 117 | 137 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.0E-7 | 117 | 140 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 31 | 162 | 195 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 280 | 200 | 221 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MPNTTEQFSN INSIESLHVS LRNLSQLSTR MDSVQSFVSQ SIQSHTLLTH HQMNIVSNEI 60 LTAIRHVITN GVALVAASEN ALPLSETPTL DSPNNNDDDN VVELDAMELL AKHLHFCEVC 120 GKGFTRDANL RMHMRAHGDE FKTPEALANK ARGETRLKAT RFSCPLEGCN RNKTHKKFRP 180 LKSVFCLRNH FKRSHCPKTL SCERCRKKSF AVLSDLRSHV KQCRGEATWK CSCGTTFSRK 240 DKLLGHVALF EGHSPMLGEE RDTVVAGPRK GYLKGSLMDW MNLDLDPFKT TLHRRNTWPW 300 GFPQII |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN29050.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028243787.1 | 0.0 | zinc finger protein STOP1 homolog | ||||
Swissprot | Q0WT24 | 4e-66 | STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 | ||||
Swissprot | Q943I6 | 9e-66 | STOP1_ORYSJ; Zinc finger protein STOP1 homolog | ||||
TrEMBL | A0A445JE99 | 0.0 | A0A445JE99_GLYSO; Zinc finger protein STOP1-like | ||||
STRING | GLYMA08G14320.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6855 | 31 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22890.1 | 7e-68 | C2H2 family protein |
Publications ? help Back to Top | |||
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