PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN28123.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 217aa MW: 24741.4 Da PI: 9.4972 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108.7 | 7e-34 | 15 | 132 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lp GfrF Ptdeel+ +yLkkk+ +++l++ +vi+e+d++++ePw+Lp ++ +++ yfFs+r++ + +r + sg Wk+ gk+k+++++ +++ KHN28123.1 15 LPIGFRFCPTDEELLLHYLKKKAFAQQLPA-SVISEFDVFQTEPWKLPGEL---RENRYFFSNRSNG-----NIKRPAGSGCWKSVGKEKQIIHSeSNQ 104 699***************************.99***************544...4578****99774.....5678889************99985777 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 ++g+k+tL f kg++++ +t+Wvmhe rl KHN28123.1 105 VIGMKETLFFCKGSHET--RTQWVMHELRL 132 8**********888877..9*******987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-40 | 8 | 153 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 39.546 | 15 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.3E-21 | 16 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MGRFENHVVK GGIKLPIGFR FCPTDEELLL HYLKKKAFAQ QLPASVISEF DVFQTEPWKL 60 PGELRENRYF FSNRSNGNIK RPAGSGCWKS VGKEKQIIHS ESNQVIGMKE TLFFCKGSHE 120 TRTQWVMHEL RLVASYPCQM PVADFAVYRI FQKNKMKTRR SHGKKPSSSS KLQRLVDVKA 180 SFFDFTVDFN HDDIGPPTPC SPCLSEGCSE ISSSKLD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-24 | 13 | 154 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-24 | 13 | 154 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-24 | 13 | 154 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-24 | 13 | 154 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-24 | 13 | 154 | 18 | 169 | NAC domain-containing protein 19 |
3swm_B | 4e-24 | 13 | 154 | 18 | 169 | NAC domain-containing protein 19 |
3swm_C | 4e-24 | 13 | 154 | 18 | 169 | NAC domain-containing protein 19 |
3swm_D | 4e-24 | 13 | 154 | 18 | 169 | NAC domain-containing protein 19 |
3swp_A | 4e-24 | 13 | 154 | 18 | 169 | NAC domain-containing protein 19 |
3swp_B | 4e-24 | 13 | 154 | 18 | 169 | NAC domain-containing protein 19 |
3swp_C | 4e-24 | 13 | 154 | 18 | 169 | NAC domain-containing protein 19 |
3swp_D | 4e-24 | 13 | 154 | 18 | 169 | NAC domain-containing protein 19 |
4dul_A | 4e-24 | 13 | 154 | 15 | 166 | NAC domain-containing protein 19 |
4dul_B | 4e-24 | 13 | 154 | 15 | 166 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN28123.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT097239 | 0.0 | BT097239.1 Soybean clone JCVI-FLGm-16C7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001239882.1 | 1e-163 | uncharacterized protein LOC100815663 | ||||
Refseq | XP_028208685.1 | 1e-163 | NAC domain-containing protein 83-like | ||||
Swissprot | Q9FY93 | 2e-42 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | A0A0B2R849 | 1e-162 | A0A0B2R849_GLYSO; NAC domain-containing protein 68 | ||||
TrEMBL | C6THW3 | 1e-162 | C6THW3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G23740.1 | 1e-162 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF704 | 34 | 139 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 6e-45 | NAC domain containing protein 83 |
Publications ? help Back to Top | |||
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