PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN25802.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 330aa    MW: 37053.4 Da    PI: 5.8807
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN25802.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.14.8e-30174234259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dg++WrKYGqKe+ gs+fprsYYrCt++   +C++kk+v+r +++p+++e+tY+g+H+++
  KHN25802.1 174 EDGFTWRKYGQKEILGSKFPRSYYRCTHQklyECQAKKQVQRLDQNPNIFEVTYRGDHTCH 234
                 7****************************9999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-28168235IPR003657WRKY domain
SuperFamilySSF1182909.68E-26170235IPR003657WRKY domain
SMARTSM007741.2E-38173235IPR003657WRKY domain
PfamPF031065.3E-27174234IPR003657WRKY domain
PROSITE profilePS5081120.208174236IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MMEEVINSIR RACVLAQNLE QDLPNLANQP AMMSLSIDQI TEAFSGAKEK MLQFSRQNQT  60
SDESPPTLVH ETTQLQPQMD ATLMQEWLRS SHALTMDQLF QMHQFHAARS TLQIGEMGGR  120
DGEDNFERNK GPEEMQGINE SSSRPRRRSR EANQEKRKVM VPAPQFGNTE MPPEDGFTWR  180
KYGQKEILGS KFPRSYYRCT HQKLYECQAK KQVQRLDQNP NIFEVTYRGD HTCHMSSTAL  240
SSVPLQQLLV DITQNNSNTI SSQLSPTMNL SLHPGGGSAA ASSGGASASR FGGDYPVVDM  300
ADAMFNSRSS SNNSMEFLFS PEDKSDPKIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-18174233968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN25802.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150355e-45AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006581709.10.0WRKY transcription factor 55 isoform X3
RefseqXP_028236291.10.0WRKY transcription factor 55-like isoform X3
TrEMBLA0A0B2R1M90.0A0A0B2R1M9_GLYSO; WRKY transcription factor 55
STRINGGLYMA06G14731.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86293142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-50WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]