PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN25522.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NAC

Protein Properties

Length: 357aa MW: 40474.5 Da PI: 8.7622

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN25522.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.8	8.1e-57	18	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeel+++yL +kv+++++++ ++i evd++++ePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat+sgyWkatgkdke+++ +++l KHN25522.1 18 LPPGFRFHPTDEELISHYLYRKVTHTNFSA-RAIGEVDLNRSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATQSGYWKATGKDKEIFR-GKSL 114 79************************99.89***********888999*************************************.999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kktLvfykgrapkgektdWvmheyrl KHN25522.1 115 VGMKKTLVFYKGRAPKGEKTDWVMHEYRL 143 ***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-65	12	168	IPR003441	NAC domain
PROSITE profile	PS51005	59.927	18	168	IPR003441	NAC domain
Pfam	PF02365	8.5E-30	19	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MENVSVLLCN KEKDQMDLPP GFRFHPTDEE LISHYLYRKV THTNFSARAI GEVDLNRSEP 60 WDLPWKAKMG EKEWYFFCVR DRKYPTGLRT NRATQSGYWK ATGKDKEIFR GKSLVGMKKT 120 LVFYKGRAPK GEKTDWVMHE YRLDGKFSVH NLPKTAKNEW VICRVFQKSS GVKRTHISGM 180 MMLDSYGNEL GYSSSALPPL TDSSPSIDNT KVLSVTDTAY VPCFSNPIDA PRGIFDSLNN 240 INITTTTTTN NNNTLYGVSS NHSFYNTQLH IPPTLPLPSS SNHYLRAFLE NQGNGSNMRN 300 NGYETEREMV SVSQETTIST DVNAEISSLG KRQFENQQNP TASSAVVPMD VATLWNY

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MENVSVLLCN KEKDQMDLPP GFRFHPTDEE LISHYLYRKV THTNFSARAI GEVDLNRSEP  60
WDLPWKAKMG EKEWYFFCVR DRKYPTGLRT NRATQSGYWK ATGKDKEIFR GKSLVGMKKT  120
LVFYKGRAPK GEKTDWVMHE YRLDGKFSVH NLPKTAKNEW VICRVFQKSS GVKRTHISGM  180
MMLDSYGNEL GYSSSALPPL TDSSPSIDNT KVLSVTDTAY VPCFSNPIDA PRGIFDSLNN  240
INITTTTTTN NNNTLYGVSS NHSFYNTQLH IPPTLPLPSS SNHYLRAFLE NQGNGSNMRN  300
NGYETEREMV SVSQETTIST DVNAEISSLG KRQFENQQNP TASSAVVPMD VATLWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	7e-56	15	174	17	174	NAC domain-containing protein 19
3swm_B	7e-56	15	174	17	174	NAC domain-containing protein 19
3swm_C	7e-56	15	174	17	174	NAC domain-containing protein 19
3swm_D	7e-56	15	174	17	174	NAC domain-containing protein 19
3swp_A	7e-56	15	174	17	174	NAC domain-containing protein 19
3swp_B	7e-56	15	174	17	174	NAC domain-containing protein 19
3swp_C	7e-56	15	174	17	174	NAC domain-containing protein 19
3swp_D	7e-56	15	174	17	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN25522.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX392400	0.0	JX392400.1 Glycine max NAC domain protein (NLP) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001276221.2	0.0	NAC domain-containing protein
Refseq	XP_028229071.1	0.0	NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-137	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A0B2R0R5	0.0	A0A0B2R0R5_GLYSO; NAC domain-containing protein 100
TrEMBL	I1JWT3	0.0	I1JWT3_SOYBN; Uncharacterized protein
STRING	GLYMA04G33270.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-137	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]