PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN25297.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 315aa    MW: 35845.2 Da    PI: 8.1148
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN25297.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR192.26.9e-29140227291
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                 fYn+YA++vGF vr+sk ++s+r+g+ + rt+vC+keg+r  +k++  k  r+raetr+gC+a+++v+k ++gkw+++k+++eH+H+l+p
  KHN25297.1 140 FYNAYATDVGFIVRVSKLSRSRRDGTAIGRTLVCNKEGFRMADKRE--KIVRQRAETRVGCRAMIMVRKLSSGKWVIAKFVKEHTHPLTP 227
                 ******************************************9988..9**************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.6E-26140227IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MSNEFSTRIE GIRWSIYASP YPNHFFCVLS VARNRGSKII SRITHRFHHD PIMEVEIDGS  60
VTVETVGNTA MGEVSSIADD NREGGSSVEP NDKQDQHDNM TQDSSGGITI PTAIPTVSVV  120
SVEEPYVGQE FGSEAAAHAF YNAYATDVGF IVRVSKLSRS RRDGTAIGRT LVCNKEGFRM  180
ADKREKIVRQ RAETRVGCRA MIMVRKLSSG KWVIAKFVKE HTHPLTPGKG RRDFYYEQYP  240
TEQDKIRELS QQLATEKKRS AAYKRHLELI FEQIEEQNEN LSKKIQHIVD SVKEMEAKEE  300
HSRQWEGDGS QRRTY
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN25297.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0944940.0BT094494.1 Soybean clone JCVI-FLGm-18B16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028193996.10.0protein FAR1-RELATED SEQUENCE 2-like isoform X1
TrEMBLA0A445HKZ60.0A0A445HKZ6_GLYSO; Protein FAR1-RELATED SEQUENCE 5 isoform B (Fragment)
STRINGGLYMA12G05600.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24533072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.25e-88FAR1 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]