PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN25297.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 315aa MW: 35845.2 Da PI: 8.1148 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 92.2 | 6.9e-29 | 140 | 227 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF vr+sk ++s+r+g+ + rt+vC+keg+r +k++ k r+raetr+gC+a+++v+k ++gkw+++k+++eH+H+l+p KHN25297.1 140 FYNAYATDVGFIVRVSKLSRSRRDGTAIGRTLVCNKEGFRMADKRE--KIVRQRAETRVGCRAMIMVRKLSSGKWVIAKFVKEHTHPLTP 227 ******************************************9988..9**************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.6E-26 | 140 | 227 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MSNEFSTRIE GIRWSIYASP YPNHFFCVLS VARNRGSKII SRITHRFHHD PIMEVEIDGS 60 VTVETVGNTA MGEVSSIADD NREGGSSVEP NDKQDQHDNM TQDSSGGITI PTAIPTVSVV 120 SVEEPYVGQE FGSEAAAHAF YNAYATDVGF IVRVSKLSRS RRDGTAIGRT LVCNKEGFRM 180 ADKREKIVRQ RAETRVGCRA MIMVRKLSSG KWVIAKFVKE HTHPLTPGKG RRDFYYEQYP 240 TEQDKIRELS QQLATEKKRS AAYKRHLELI FEQIEEQNEN LSKKIQHIVD SVKEMEAKEE 300 HSRQWEGDGS QRRTY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN25297.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094494 | 0.0 | BT094494.1 Soybean clone JCVI-FLGm-18B16 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028193996.1 | 0.0 | protein FAR1-RELATED SEQUENCE 2-like isoform X1 | ||||
TrEMBL | A0A445HKZ6 | 0.0 | A0A445HKZ6_GLYSO; Protein FAR1-RELATED SEQUENCE 5 isoform B (Fragment) | ||||
STRING | GLYMA12G05600.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2453 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 5e-88 | FAR1 family protein |
Publications ? help Back to Top | |||
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