PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN21942.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 81aa    MW: 9757.2 Da    PI: 8.7457
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN21942.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS64.32.5e-20278296373
        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 n +aceg+er+er et+++W+ r ++aGFk++pl+e+ +++ ++ l++++ d + ++e+++++++gWk+r   + ++W
  KHN21942.1   2 NFIACEGSERIERPETYKQWQVRNMKAGFKQLPLDEELMAKFRSKLKEYHRD-FVLDENNNWMLQGWKGRIFNASTCW 78 
                 99************************************************66.************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098513.65160IPR005202Transcription factor GRAS
PfamPF035148.8E-18278IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MNFIACEGSE RIERPETYKQ WQVRNMKAGF KQLPLDEELM AKFRSKLKEY HRDFVLDENN  60
NWMLQGWKGR IFNASTCWVP A
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN21942.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014619523.11e-48scarecrow-like protein 31
RefseqXP_025980192.11e-48scarecrow-like protein 31
RefseqXP_028187655.11e-48scarecrow-like protein 31
RefseqXP_028187656.11e-48scarecrow-like protein 31
RefseqXP_028192342.12e-48scarecrow-like protein 14
SwissprotQ3EDH02e-34SCL31_ARATH; Scarecrow-like protein 31
TrEMBLA0A445HLP25e-47A0A445HLP2_GLYSO; Scarecrow-like protein 14 isoform A
TrEMBLI1LK073e-47I1LK07_SOYBN; Uncharacterized protein
STRINGGLYMA11G14700.15e-48(Glycine max)
STRINGGLYMA12G06655.19e-48(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14801813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07520.18e-37GRAS family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]