PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN21019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 445aa MW: 49788 Da PI: 8.2254 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.9 | 9.2e-19 | 33 | 113 | 9 | 97 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 d+ + l lpk+f ++ + k+ + +tl+ + g W++ + + ++++ +++ GW++Fvk++ Lke+Df+vFk++g+s+f v +f KHN21019.1 33 DYD--QHLALPKTFSDNLK--KKLPENVTLKGPGGVMWNIGM--TTRDDTLYFGHGWEQFVKDHCLKENDFLVFKYNGESQF--DVLIF 113 443..3499*****85555..558889***************..9********************************99999..77666 PP | |||||||
2 | B3 | 34.8 | 3e-11 | 309 | 389 | 4 | 87 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 v++p +v k+ +++ + + +h ++ +s++++l+ + +W +++y++ ++ lt+GWk+F + +L+egD +vFk g+ KHN21019.1 309 VMKPTHVYKRFFVSIRGTWIGKHISP--SSQDVILRMGK-GEWIARYSYNNIRNNGGLTGGWKHFSLDSNLEEGDACVFKPAGQ 389 67888999999999999999888655..67789988855.58*******99999999***********************7665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.94E-22 | 21 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 15.284 | 23 | 116 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-22 | 25 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.14E-20 | 25 | 114 | No hit | No description |
SMART | SM01019 | 8.9E-17 | 26 | 116 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.2E-15 | 35 | 112 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.75E-11 | 306 | 391 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-14 | 306 | 390 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.019 | 306 | 404 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.4E-9 | 309 | 389 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.51E-11 | 309 | 402 | No hit | No description |
PROSITE profile | PS50863 | 8.839 | 347 | 404 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005773 | Cellular Component | vacuole | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MVGQNCDGCR SWEEDIYWSH FQFLHFVQFL HADYDQHLAL PKTFSDNLKK KLPENVTLKG 60 PGGVMWNIGM TTRDDTLYFG HGWEQFVKDH CLKENDFLVF KYNGESQFDV LIFNGWSLCE 120 KAGSYFVRKC GHTEIDHAGG SLNKKRDTDN DSLEEGNIPS NAGVECALHE KSAHVNGTKE 180 PIDVPPETPP TENTFNAGVE SSGVEQFTPD GGVTLAAVPS ETANGKRIRN IVSAVKHVHT 240 KRKGRPAKWH VRERTLDWVA ALEAEPVSAS RSGTYEVYKS NRRPVTDDET RKIESLAKAA 300 CTDDSIYVVM KPTHVYKRFF VSIRGTWIGK HISPSSQDVI LRMGKGEWIA RYSYNNIRNN 360 GGLTGGWKHF SLDSNLEEGD ACVFKPAGQI NNTFVIDMSI FRVVPETVPL TPMSRGTRTG 420 TRTGTGRRGR KPATMKSIQT QLSSP |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00468 | DAP | Transfer from AT4G33280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN21019.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098236 | 0.0 | BT098236.1 Soybean clone JCVI-FLGm-23C7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006595618.1 | 0.0 | uncharacterized protein LOC100813851 isoform X1 | ||||
Refseq | XP_028199087.1 | 0.0 | B3 domain-containing protein REM16-like isoform X1 | ||||
TrEMBL | A0A445H311 | 0.0 | A0A445H311_GLYSO; B3 domain-containing protein REM16 | ||||
TrEMBL | K7M5I9 | 0.0 | K7M5I9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA14G08630.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4446 | 26 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 8e-42 | B3 family protein |
Publications ? help Back to Top | |||
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