PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN20305.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | Trihelix | ||||||||
Protein Properties | Length: 292aa MW: 34854.3 Da PI: 7.4212 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 80.3 | 2.8e-25 | 36 | 118 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ qe+++ + +r e+++++ ++k++k+lWe +s++m+e+gf+rs++qCk+kw+nl +ryk ++++e + ++++p++++l+ KHN20305.1 36 QWSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNRMKEKGFHRSAEQCKCKWKNLVTRYKGCETMEPEA---MRQQFPFYNELQ 118 7********************************************************************95...56689*****98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 3.87E-22 | 35 | 100 | No hit | No description |
Pfam | PF13837 | 2.5E-20 | 36 | 120 | No hit | No description |
PROSITE profile | PS50090 | 7.317 | 37 | 93 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MEGHHLHHRQ QQLQQHHHPH HNITTSNVDA TDRFPQWSIQ ETKEFLVIRA ELDQTFMETK 60 RNKQLWEVIS NRMKEKGFHR SAEQCKCKWK NLVTRYKGCE TMEPEAMRQQ FPFYNELQAI 120 FAARMQRMLW AEAEGGGSNN KKKGMHLSSD DEEEGNEEMM SEGDHKGNII ISKKNKKKGK 180 MVIGVGGSGN NNNSSSSSNN LESLKEIMDE FMRQQMQMEA QWMEAFEARE NERRLKEMEW 240 RQTMEALENE RLMMDQRWRE REEQRRIREE VRADKRDALI TALLNKLRRE EM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00481 | DAP | Transfer from AT5G01380 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN20305.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 1e-103 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028213264.1 | 0.0 | trihelix transcription factor GT-3b-like | ||||
Swissprot | Q9SDW0 | 3e-73 | TGT3A_ARATH; Trihelix transcription factor GT-3a | ||||
TrEMBL | A0A0B2QGG4 | 0.0 | A0A0B2QGG4_GLYSO; Trihelix transcription factor GT-3a | ||||
STRING | GLYMA18G43190.2 | 1e-159 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1781 | 33 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01380.1 | 3e-56 | Trihelix family protein |
Publications ? help Back to Top | |||
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