PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN17905.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 264aa    MW: 29795.4 Da    PI: 8.4191
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN17905.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00015678123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ C++ F++   L  H+++H
  KHN17905.1 56 YSCNFCKREFRSAQALGGHMNVH 78
                99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.02E-65383No hitNo description
PROSITE profilePS5015711.2195683IPR007087Zinc finger, C2H2
SMARTSM003550.00725678IPR015880Zinc finger, C2H2-like
PfamPF139127.3E-65679IPR007087Zinc finger, C2H2
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MEESQYLLWI RRKQMLKSHI QQPFGTNNNS SSWEERAFAE DAARILGGCI WPPRSYSCNF  60
CKREFRSAQA LGGHMNVHRR DRARLKQSLS HHHNELALQH HHKNDCTVAT SKVSSSRPSN  120
ISIQENCYHH QPTMSSYSSS IGWGHHHHNM GSSDSEPKEQ VTAREEFLKG LGCNDFFETS  180
LSVGQSAVVF GQKLPTTTDH SCGDEAISYK RSKTSMAPLP AVFLKPCSND RNLTFQSAEF  240
VLGVKPGMED LDLELRLGKP QKVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-125178229superman protein
2l1o_A1e-125178229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN17905.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028195741.10.0probable transcriptional regulator RABBIT EARS
TrEMBLA0A445HGX20.0A0A445HGX2_GLYSO; Zinc finger protein 10
STRINGGLYMA11G34285.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.12e-27zinc-finger protein 10
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]