PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN16908.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 218aa MW: 24343.2 Da PI: 7.6286 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62.4 | 9.4e-20 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEdell+++++++G g+Wk+I++ g+ R++k+c++rw +yl KHN16908.1 15 KGPWSKEEDELLINYINLHGQGNWKSIPKAAGLLRCGKSCRLRWTNYL 62 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51 | 3.4e-16 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g++T+eE l+++++ +lG++ W+ Ia ++ gRt++++k++w ++l KHN16908.1 68 KGNFTEEESNLIIHLHSLLGNK-WSQIATSLP-GRTDNEIKNYWKSHL 113 79********************.*********.***********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.34 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.34E-31 | 14 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.4E-17 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-18 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-25 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.58E-14 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 26.289 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 8.2E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-15 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.94E-12 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.3E-26 | 70 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MGRTPCSDKE QINKKGPWSK EEDELLINYI NLHGQGNWKS IPKAAGLLRC GKSCRLRWTN 60 YLRPDLKKGN FTEEESNLII HLHSLLGNKW SQIATSLPGR TDNEIKNYWK SHLKRYLYAL 120 GIDPVTHKPF KEDTNTTSTP PNNSMATTTS TIPRIYYFNV FLNSKVHISA DDDYSADGGA 180 DSNSSSGVTI EEASPQVNLE LSIAPPSQPH EDAASVKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-29 | 15 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN16908.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003532377.1 | 1e-162 | myb-related protein 330 | ||||
Refseq | XP_028243204.1 | 1e-162 | myb-related protein 330-like | ||||
TrEMBL | A0A445J7Y4 | 1e-161 | A0A445J7Y4_GLYSO; Transcription factor MYB7 | ||||
TrEMBL | K7L495 | 1e-161 | K7L495_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G00810.2 | 1e-162 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16720.1 | 8e-69 | myb domain protein 7 |
Publications ? help Back to Top | |||
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