PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN14776.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 405aa    MW: 44246.9 Da    PI: 8.2016
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN14776.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.25.7e-132551127
                --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                ++++ C++++rtG C++G++C+F+H+p
  KHN14776.1 25 PGEPDCSYYMRTGLCRFGATCRFNHPP 51
                5789*********************97 PP
2zf-CCCH19.32e-0679941227
                TS--TTTTT-SS-SSS CS
     zf-CCCH 12 tGtCkyGdrCkFaHgp 27
                t tCk+G++CkF+H++
  KHN14776.1 79 TRTCKFGATCKFHHPK 94
                789***********96 PP
3zf-CCCH38.71.7e-12116140327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +++C +++rtG+Ck+G++CkF+H++
  KHN14776.1 116 EPECTYYLRTGQCKFGNTCKFHHPQ 140
                 799********************97 PP
4zf-CCCH391.3e-12266292127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++C+f+++tG Ck+G+ C+F+H++
  KHN14776.1 266 PGQPECQFYMKTGDCKFGAVCRFHHPQ 292
                 5789*********************97 PP
5zf-CCCH38.22.4e-12312338127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++lC f++r+G+Ck+G++CkF H++
  KHN14776.1 312 PGEPLCVFYSRYGICKFGPSCKFDHPM 338
                 589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.9252452IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-72451IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-102651IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-52952IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-43050IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.1556995IPR000571Zinc finger, CCCH-type
SMARTSM003564.76994IPR000571Zinc finger, CCCH-type
PfamPF146083.18293No hitNo description
PROSITE profilePS5010315.939113141IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-6113140IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6116141IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-10116140IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4119139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.605265293IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-6265292IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-9267292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-6269295IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-5271293IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7311338IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.432311339IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-9313338IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-5314339IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-4316337IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016740Molecular Functiontransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
LSDSLWMMNL RTGETMDSGS YPERPGEPDC SYYMRTGLCR FGATCRFNHP PNRKLAIATA  60
RMIGEFPERI GQPECQACTR TCKFGATCKF HHPKDQAGIA GRVALNILGY PLRPNEPECT  120
YYLRTGQCKF GNTCKFHHPQ PSNMMLSLRG SPVYPTVHSP TTPGQQSYAG GTYIPSPRWQ  180
GPSSYAPLIL PQGVVSVPGW SAYSGQMGSI STSDSPQQAM RNGQTYGTSR QGELAGSQGA  240
YSQFRSGTVP VGFYTLQREN IFPERPGQPE CQFYMKTGDC KFGAVCRFHH PQERLVPAPN  300
CVLSPIGLPL RPGEPLCVFY SRYGICKFGP SCKFDHPMEI FSHNISASPS ADAPSRHLLG  360
SSSGTAALNL SSEGLVESSS AKPRRLSLSE TRQIPSGDDD IDDDG
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN14776.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1468021e-153BT146802.1 Lotus japonicus clone JCVI-FLLj-23L7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003536159.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_028182771.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A445INP40.0A0A445INP4_GLYSO; Zinc finger CCCH domain-containing protein ZFN-like isoform A
TrEMBLI1LBV80.0I1LBV8_SOYBN; Uncharacterized protein
STRINGGLYMA10G31370.60.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-167zinc finger protein 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]