PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN12746.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 439aa MW: 48963.3 Da PI: 8.5426 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.2 | 7.2e-19 | 35 | 113 | 11 | 97 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + l lpk f ++ + k+ + +tl+ + g +W++ + + ++++ +++ GW++Fvk++ Lke+Df+vFk++g+s+f v +f KHN12746.1 35 DQ--HLALPKAFSDNLK--KKLPENVTLKGPGGVVWNIGM--TTRDDTLYFAHGWEQFVKDHCLKENDFLVFKYNGESQF--DVLIF 113 33..389*****85544..558889***************..9********************************99999..77776 PP | |||||||
2 | B3 | 39.5 | 1e-12 | 311 | 398 | 4 | 94 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 v++ps+v k+ +++ + + +h ++ +s++++l+ + +W +++y++ ++ lt+GWk+F +n+L+egD +vFk g+++ ++v+ KHN12746.1 311 VMKPSHVYKRFFVSMRGTWIGKHISP--SSQDVILRMGK-GEWIARYSYNNIRNNGGLTGGWKHFSLDNNLEEGDACVFKPAGQMNNTFVI 398 68899999999999999999888655..67789988855.58*******99999999***********************88877766665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.47E-22 | 20 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 15.411 | 23 | 116 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.55E-21 | 25 | 114 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-22 | 25 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.3E-18 | 26 | 116 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-15 | 36 | 113 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.8E-16 | 307 | 398 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-13 | 308 | 398 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0026 | 308 | 406 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-10 | 311 | 398 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.28E-13 | 311 | 404 | No hit | No description |
PROSITE profile | PS50863 | 9.319 | 349 | 406 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence Send to blast |
MVGQNCGGCR SWEEDIYWSH FQFLHFVQFL RADYDQHLAL PKAFSDNLKK KLPENVTLKG 60 PGGVVWNIGM TTRDDTLYFA HGWEQFVKDH CLKENDFLVF KYNGESQFDV LIFNGGSLCE 120 KAGSYFVRKC GHTGIEHAGG SLNKKRDTDN NSLEEGNIPP SNAGVECALH EKSVHANGTK 180 EPIDVPPETP PTEKTFNAGV ESSGVEQFTP DGGVTLVAVP SETANGKRIR NIVSAVKHVQ 240 TKRRGRPAKV HVRERTLDWV AALEASEPIS TSRSGTYEVY KSNRRPVTDD ETKMIESLAK 300 AACTEDSIYV VMKPSHVYKR FFVSMRGTWI GKHISPSSQD VILRMGKGEW IARYSYNNIR 360 NNGGLTGGWK HFSLDNNLEE GDACVFKPAG QMNNTFVIDM SIFRVVPETV PLTPMSRGTG 420 RRGRKQATMK SIQTQLSPP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN12746.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098236 | 0.0 | BT098236.1 Soybean clone JCVI-FLGm-23C7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028209176.1 | 0.0 | B3 domain-containing protein REM16-like isoform X1 | ||||
TrEMBL | A0A445GBK5 | 0.0 | A0A445GBK5_GLYSO; B3 domain-containing protein REM16 | ||||
STRING | GLYMA17G36490.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4446 | 26 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 7e-49 | B3 family protein |