PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN11849.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

G2-like

Protein Properties

Length: 265aa MW: 29969.9 Da PI: 8.7346

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN11849.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.9	4.6e-33	21	75	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl KHN11849.1 21 KPRLRWTADLHDRFVDAVKKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 75 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.8E-32	18	76	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.931	18	78	IPR017930	Myb domain
SuperFamily	SSF46689	1.54E-16	21	78	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-24	21	76	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-9	23	74	IPR001005	SANT/Myb domain
Pfam	PF14379	9.5E-24	119	164	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MEGGGREGYN GIVMTMTRDP KPRLRWTADL HDRFVDAVKK LGGPDKATPK SVLRLMGLKG 60 LTLYHLKSHL QKYRLGQQAR KQNEDMHKEN NRCSYVNFSN RSSAPNTSYR GDDEGGEIPI 120 AEAMRCQIEV QKRLEEQLEV QKKLQMRIEA QGKYLQAMLE KAQRSLSLDG PGSLEASRAQ 180 LTEFNSVLSN FMENMKKDSK ENIIEVSDFY SKSHDSAFHY QEVGRDQKPK VEGGSIQFDL 240 NIKGSNDLVC AGGAEMDANM ISYRV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-18	21	74	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-18	21	74	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-18	21	74	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-18	21	74	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN11849.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	1e-102	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028182108.1	0.0	myb family transcription factor PHL11-like
Swissprot	C0SVS4	2e-78	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A445J423	0.0	A0A445J423_GLYSO; Myb family transcription factor PHL11 isoform C
STRING	GLYMA09G34461.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5101	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	7e-80	G2-like family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]