PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN11473.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 562aa MW: 60750.6 Da PI: 9.4418 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.2 | 2.9e-05 | 71 | 93 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H KHN11473.1 71 FICEVCNKGFQREQNLQLHRRGH 93 89*******************88 PP | |||||||
2 | zf-C2H2 | 11.9 | 0.00067 | 147 | 169 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ KHN11473.1 147 WKCDKCSKKYAVQSDWKAHSKTC 169 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 6.2E-6 | 70 | 93 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.9E-7 | 70 | 93 | No hit | No description |
Pfam | PF12171 | 2.7E-5 | 71 | 93 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.99 | 71 | 93 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0052 | 71 | 93 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 73 | 93 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 112 | 142 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.3E-5 | 135 | 168 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.9E-7 | 142 | 167 | No hit | No description |
SMART | SM00355 | 150 | 147 | 167 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 562 aa Download sequence Send to blast |
MAASSSSASL FGFREEDQNQ MKQQHSLTPS SSTTPAAPPP QKKKRNQPGT PYPDAEVIAL 60 SPKTLMATNR FICEVCNKGF QREQNLQLHR RGHNLPWKLK QKTTKEPKRK VYLCPEPTCV 120 HHDPSRALGD LTGIKKHYSR KHGEKKWKCD KCSKKYAVQS DWKAHSKTCG TREYRCDCGT 180 LFSRRDSFIT HRAFCDALAQ ESARQPPSLS GGGIGSHLYG STTNMALNLS QVGSQISTMQ 240 DPNAQPTELL RLGATSGRTG HFDHILGSPF RPSNQQQQPF FMSEQPNQTY HHPDQNKPFQ 300 QGLMQLSDHL NNNSHHNNSP FSLPFLSNNT SNASFSEHFN NANGGGGNNN NNNNEGTNYF 360 ATSSAPSLFS NSVNASALSH MSATALLQKA AQMGATSSNG TASLLKSFGS ASSSSGGGSK 420 LVNAANYVSG MFGGNNHVNE QSNSNLQDLM NSFAVGGNSS IFEDGFEAYE HSNNNSNRDP 480 KVHAMSGSSS SIGGSDRLTR DFLGVGQIVR GMSGSGGVAQ REQQQQHGFN LSSLEAERYN 540 NNSNNAAPSS GQAFGGGGGN FQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-35 | 143 | 204 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 2e-35 | 143 | 204 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00255 | DAP | Transfer from AT2G02070 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN11473.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC160454 | 0.0 | AC160454.31 Glycine max cultivar Williams 82 clone gmw1-15k6, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003555867.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_006605876.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_006605877.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_028220097.1 | 0.0 | protein indeterminate-domain 5, chloroplastic-like | ||||
Refseq | XP_028220098.1 | 0.0 | protein indeterminate-domain 5, chloroplastic-like | ||||
Refseq | XP_028220099.1 | 0.0 | protein indeterminate-domain 5, chloroplastic-like | ||||
Swissprot | Q9ZUL3 | 1e-136 | IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic | ||||
TrEMBL | K7N2T9 | 0.0 | K7N2T9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G24366.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1536 | 33 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G02080.1 | 1e-113 | indeterminate(ID)-domain 4 |
Publications ? help Back to Top | |||
---|---|---|---|
|