PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN08070.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WOX
Protein Properties Length: 337aa    MW: 37953 Da    PI: 7.5877
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN08070.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.81.4e-2177137257
                 T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                 ++R+++t+ ql +Leel+++ +++psae+++++A++l    +++ ++V++WFqN++a+e++
  KHN08070.1  77 STRWSPTPVQLLVLEELYRQgTKTPSAEQIQQIASQLrqfgKIEGKNVFYWFQNHKARERQ 137
                 68*****************99**************************************97 PP
2Wus_type_Homeobox112.12.9e-3676139265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++tRW+Ptp Q+ +Leely++G++tP++e+iq+i+++L+++Gkie+kNVfyWFQN+kaRerqk+
         KHN08070.1  76 QSTRWSPTPVQLLVLEELYRQGTKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARERQKR 139
                        789***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-957137IPR009057Homeodomain-like
PROSITE profilePS5007112.43873138IPR001356Homeobox domain
SMARTSM003895.9E-775142IPR001356Homeobox domain
SuperFamilySSF466892.48E-1278140IPR009057Homeodomain-like
CDDcd000865.86E-678133No hitNo description
PfamPF000464.1E-1978137IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MSDSFGSTFH SSTPNSTLNS HAPPKITTFC SIAQPYCICT HCNHILTFNH HVGNVAEEGT  60
NSTGSHNNNL QSQQQQSTRW SPTPVQLLVL EELYRQGTKT PSAEQIQQIA SQLRQFGKIE  120
GKNVFYWFQN HKARERQKRR RREMEENNNN NISASSSGEG LKETGCGVKE TKKWASTSNC  180
SGHAEESAAL DIAEKGSNGW TQFEGKDSIQ VLMRRNIAEK QAKLQEIMEM PCFPPVTMEA  240
STPTTSHRRT THYNTQLLTP QNYNNLPSSV INRESLNYYG GEENAAPRTL DLFPHKRDDQ  300
HGISLAERKS SMFCASASMD TEVTSNNQFF EFLPLRN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN08070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150345e-85AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028221296.10.0WUSCHEL-related homeobox 1-like
TrEMBLA0A445EZL50.0A0A445EZL5_GLYSO; WUSCHEL-related homeobox 1 isoform A
STRINGGLYMA20G02161.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF151541012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.15e-30WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]