PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN08070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WOX | ||||||||
Protein Properties | Length: 337aa MW: 37953 Da PI: 7.5877 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.8 | 1.4e-21 | 77 | 137 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++t+ ql +Leel+++ +++psae+++++A++l +++ ++V++WFqN++a+e++ KHN08070.1 77 STRWSPTPVQLLVLEELYRQgTKTPSAEQIQQIASQLrqfgKIEGKNVFYWFQNHKARERQ 137 68*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 112.1 | 2.9e-36 | 76 | 139 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++tRW+Ptp Q+ +Leely++G++tP++e+iq+i+++L+++Gkie+kNVfyWFQN+kaRerqk+ KHN08070.1 76 QSTRWSPTPVQLLVLEELYRQGTKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARERQKR 139 789***********************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-9 | 57 | 137 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.438 | 73 | 138 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.9E-7 | 75 | 142 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.48E-12 | 78 | 140 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.86E-6 | 78 | 133 | No hit | No description |
Pfam | PF00046 | 4.1E-19 | 78 | 137 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MSDSFGSTFH SSTPNSTLNS HAPPKITTFC SIAQPYCICT HCNHILTFNH HVGNVAEEGT 60 NSTGSHNNNL QSQQQQSTRW SPTPVQLLVL EELYRQGTKT PSAEQIQQIA SQLRQFGKIE 120 GKNVFYWFQN HKARERQKRR RREMEENNNN NISASSSGEG LKETGCGVKE TKKWASTSNC 180 SGHAEESAAL DIAEKGSNGW TQFEGKDSIQ VLMRRNIAEK QAKLQEIMEM PCFPPVTMEA 240 STPTTSHRRT THYNTQLLTP QNYNNLPSSV INRESLNYYG GEENAAPRTL DLFPHKRDDQ 300 HGISLAERKS SMFCASASMD TEVTSNNQFF EFLPLRN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN08070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 5e-85 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028221296.1 | 0.0 | WUSCHEL-related homeobox 1-like | ||||
TrEMBL | A0A445EZL5 | 0.0 | A0A445EZL5_GLYSO; WUSCHEL-related homeobox 1 isoform A | ||||
STRING | GLYMA20G02161.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15154 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18010.1 | 5e-30 | WUSCHEL related homeobox 1 |
Publications ? help Back to Top | |||
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