PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN07408.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 434aa MW: 48445.8 Da PI: 8.2223 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.5 | 9.1e-11 | 143 | 172 | 5 | 34 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeek 34 k rr+++NReAAr+sR+RKka++++Le KHN07408.1 143 KTLRRLAQNREAARKSRLRKKAYVQQLESS 172 7789***********************974 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 6.1E-9 | 137 | 185 | No hit | No description |
SMART | SM00338 | 1.2E-7 | 139 | 212 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.22 | 141 | 185 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.13E-7 | 143 | 185 | No hit | No description |
Pfam | PF00170 | 6.4E-8 | 143 | 176 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 146 | 161 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 3.0E-32 | 235 | 308 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 434 aa Download sequence Send to blast |
MQSSSSSSSI PGNYLGSKDS GAYDLGELDQ AFFLYLDGQA DPSSVQDQRQ NSSSGMRPPT 60 LNIFPSKPMH VEPSSSKSKA NIELVSPQTS GSKRPSEPSM ELANPRNETA SAPQPPKPVK 120 REGNRKGPTS SSEHEGPKTP DPKTLRRLAQ NREAARKSRL RKKAYVQQLE SSRIRLNQLE 180 QELQRARTQG MFLGGGALLG GEQGLPVTMN TISTEAAMFD VEYARWQEEN HRIVCELRAA 240 VQEHLPENEL RLFVDNCLAH YDQVMNLKSL VAKTDVFHLV SGMWKTPAER CFMWIGGFRP 300 SELIKIIVSQ IEPLTEQQIL GICGLQQSTQ EAEEALSQGL EALNQSLSDT ITSDSLSYPP 360 NMANYMGQMA VAMNKLSTLE GFVRQADNLR HQTIHRLHQI LTTRQAARCF LAIAEYFHRL 420 RALSSLWLAR PRQE |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00491 | DAP | Transfer from AT5G06839 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN07408.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 1e-100 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001345638.1 | 0.0 | putative bZIP domain class transcription factor | ||||
Refseq | XP_028225357.1 | 0.0 | bZIP transcription factor TGA10-like isoform X2 | ||||
Swissprot | Q52MZ2 | 0.0 | TGA10_TOBAC; bZIP transcription factor TGA10 | ||||
TrEMBL | A0A445LC33 | 0.0 | A0A445LC33_GLYSO; BZIP transcription factor TGA10 | ||||
TrEMBL | K7KF09 | 0.0 | K7KF09_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G29825.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4731 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06839.3 | 1e-176 | bZIP family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|