PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN07282.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Dof
Protein Properties Length: 332aa    MW: 36557.7 Da    PI: 8.5551
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN07282.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof113.21.1e-3551109361
      zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                 +++lkcprCdstntkfCyynny+ sqPr+fC+aC+r+WtkGG+lrnvPvGggr++++ +
  KHN07282.1  51 SESLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRVK 109
                 5789***********************************************97766544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-204998IPR003851Zinc finger, Dof-type
PfamPF027011.4E-3153106IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.46554108IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105692IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MGLSSKQVSS SGLDWKQTLL EAQNLELPKP NLMRKQQQQQ QQQQQQTQPN SESLKCPRCD  60
STNTKFCYYN NYNKSQPRHF CRACKRHWTK GGTLRNVPVG GGRKNKRVKK SITPITTSST  120
TTTPITTATS TCTATVTTSI GNNMDAMLGC YSHMTIQTPL ADDQKNMSSS LYQALIRPPP  180
LLLQQNLLNT RELEGKDFGI GIGNNGIFPS STLALPTHQS QSLLFPFSAS SRSFDTNPCS  240
VVSTSLRSSN VYNYGEDQFK AIEEPTINST TATIVPSTGG TNNTHHPWEI AAATSGVGLG  300
TSSNSNYWNW EDFDSLVSTD LKDPWDDSDI KP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN07282.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529308.10.0dof zinc finger protein DOF3.2
RefseqXP_028241001.10.0dof zinc finger protein DOF3.2-like
TrEMBLA0A0B2PIC30.0A0A0B2PIC3_GLYSO; Dof zinc finger protein 4 isoform A
TrEMBLI1KLH30.0I1KLH3_SOYBN; Uncharacterized protein
STRINGGLYMA07G31340.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51073356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.15e-26DOF zinc finger protein 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]