PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN07037.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 279aa MW: 30767.5 Da PI: 8.6076 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00022 | 94 | 116 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H KHN07037.1 94 FSCNYCQRKFYSSQALGGHQNAH 116 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.56E-6 | 91 | 122 | No hit | No description |
PROSITE profile | PS50157 | 11.406 | 94 | 121 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 96 | 116 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
METLSHESPF YDNNLSAEKT PPSPSTPLQN PQEKKQLSVK EQEEAKTDTL LDLNAFGDDS 60 AVGCSPVLNL ITCLDTDLPS TSSENQHGSE PRVFSCNYCQ RKFYSSQALG GHQNAHRRER 120 SITKRGHHRS GSRGMMASAT TAFGIPFLHN HLHHYATMAS LPLHGGCSNN KPLGIKAHSI 180 IHKPSSNSSH ISFNGFGTTF GHHGWSRPLI DQQPRIGKLT MESCHKTSRG NVGKFDAVKT 240 TMINSATIEE ISGYNMISGV TRFKTNQEEM KHLDLSLKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN07037.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028235189.1 | 0.0 | zinc finger protein 1-like | ||||
TrEMBL | A0A445K5K2 | 0.0 | A0A445K5K2_GLYSO; Zinc finger protein 3 | ||||
STRING | GLYMA06G06750.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1439 | 31 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80730.1 | 2e-40 | zinc-finger protein 1 |
Publications ? help Back to Top | |||
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