PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN06707.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C3H | ||||||||
Protein Properties | Length: 195aa MW: 22014 Da PI: 8.7924 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 48.6 | 1.3e-15 | 111 | 136 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tGtC+yGd C+FaHg KHN06707.1 111 FKTELCNKWQETGTCPYGDHCQFAHG 136 79***********************8 PP | |||||||
2 | zf-CCCH | 19.5 | 1.8e-06 | 149 | 173 | 1 | 25 |
--S---SGGGGTS.--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaH 25 ykte Cr ++ G C+yG rC+F H KHN06707.1 149 YKTEVCRMVLA-GvVCPYGHRCHFRH 173 9**********.66**********88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-19 | 106 | 143 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-11 | 107 | 142 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5E-9 | 110 | 137 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.004 | 110 | 138 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-12 | 111 | 136 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.2E-12 | 144 | 177 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-8 | 144 | 178 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.803 | 148 | 176 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.8E-4 | 148 | 175 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MYNALEAIFS NNKELQEISE ESPTSVIENN NVVEVERFSL PKSISVRSNG YLKTAQSAAL 60 APNNNNATRN KGATRPRASA TPPEPVQKVY VRGGQKEEEP LEMIVYNQGM FKTELCNKWQ 120 ETGTCPYGDH CQFAHGIGEL RPVIRHPRYK TEVCRMVLAG VVCPYGHRCH FRHALTEQEK 180 AVVSQPKPRS MKLER |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 4e-22 | 111 | 177 | 4 | 70 | Butyrate response factor 2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN06707.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 1e-147 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028183258.1 | 1e-136 | zinc finger CCCH domain-containing protein 15-like | ||||
Swissprot | Q9C9F5 | 1e-68 | C3H15_ARATH; Zinc finger CCCH domain-containing protein 15 | ||||
TrEMBL | A0A445ITM2 | 1e-135 | A0A445ITM2_GLYSO; Zinc finger CCCH domain-containing protein 15 | ||||
STRING | GLYMA10G41531.1 | 1e-134 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2778 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 4e-68 | C3H family protein |
Publications ? help Back to Top | |||
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