PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN06141.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bZIP

Protein Properties

Length: 370aa MW: 41827.8 Da PI: 8.5873

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN06141.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34	6.4e-11	76	106	3	33
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLee 33 + k+ rr ++NReAAr++R+RKka++++Le+ KHN06141.1 76 DTKALRRQAQNREAARKCRLRKKAYVQQLET 106 67999************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.3E-9	69	122	No hit	No description
SMART	SM00338	0.0031	74	134	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.76	76	111	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.0E-8	76	112	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.65E-7	78	119	No hit	No description
PROSITE pattern	PS00036	0	81	96	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.1E-28	167	240	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MNSSSTQLVL TKRMGIYDPF HQVNMWGDSF KIDGSLNSIA PQMLMIKPSM RNKSECTPHE 60 SREPSGDDQE INDKADTKAL RRQAQNREAA RKCRLRKKAY VQQLETSRVK LMQLELEIEK 120 ARKQGMYIRR ALDVSYMGSS ATVNPARITL FELEYGQWIE EQDRLNQELR NALQTQASEM 180 QLHLLVESCL SHYSNLFRMK AEAAKADVFY LISGAWKASV ERLFLWIGGS RPSQLLNIIA 240 PQLEPLTDQQ IVSISNLRLS SQQAEDALSL GLGKLQQSLV HNIPSDPLVV GHYGFEMAAA 300 MDKGEALEGF VNQADHLRQQ TLIHMSRILT TGQAAKGLLA MGEYFHRLRT LSSLWTARSC 360 DPSFPTQLSN

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MNSSSTQLVL TKRMGIYDPF HQVNMWGDSF KIDGSLNSIA PQMLMIKPSM RNKSECTPHE  60
SREPSGDDQE INDKADTKAL RRQAQNREAA RKCRLRKKAY VQQLETSRVK LMQLELEIEK  120
ARKQGMYIRR ALDVSYMGSS ATVNPARITL FELEYGQWIE EQDRLNQELR NALQTQASEM  180
QLHLLVESCL SHYSNLFRMK AEAAKADVFY LISGAWKASV ERLFLWIGGS RPSQLLNIIA  240
PQLEPLTDQQ IVSISNLRLS SQQAEDALSL GLGKLQQSLV HNIPSDPLVV GHYGFEMAAA  300
MDKGEALEGF VNQADHLRQQ TLIHMSRILT TGQAAKGLLA MGEYFHRLRT LSSLWTARSC  360
DPSFPTQLSN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN06141.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT091783	0.0	BT091783.1 Soybean clone JCVI-FLGm-8F18 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028198694.1	0.0	transcription factor TGA7-like isoform X1
Refseq	XP_028198695.1	0.0	transcription factor TGA7-like isoform X2
Refseq	XP_028198696.1	0.0	transcription factor TGA7-like isoform X2
Refseq	XP_028198697.1	0.0	transcription factor TGA7-like isoform X2
Swissprot	Q93ZE2	1e-130	TGA7_ARATH; Transcription factor TGA7
TrEMBL	A0A0B2PAA3	0.0	A0A0B2PAA3_GLYSO; Transcription factor TGA7
STRING	GLYMA14G33800.6	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1096	34	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	1e-125	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]