PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN06114.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 393aa    MW: 44469.6 Da    PI: 4.6758
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN06114.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.15.3e-10344392247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      ++W++ E+e l  av ++G g+Wk+I        + Rt+ ++k++w++ 
       KHN06114.1 344 KKWSQLEEETLRTAVDKFGRGNWKLILDSHKdifEERTEVDLKDKWRNM 392
                      58********************************9************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.659338393IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-11339392IPR009057Homeodomain-like
SuperFamilySSF466896.79E-13340392IPR009057Homeodomain-like
PfamPF002492.7E-8344392IPR001005SANT/Myb domain
CDDcd116609.72E-17344393No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
VAVECTLKHL LLELHNNPAY LGAVNRIWRG RVRLMSGSGE GSLLLSPELE RWRTDIEASL  60
LDSSVRERLA SIDTRRDAVF KLRDYLKEAW TDLGPSFLER AALAHINNNA LAANHSEDSQ  120
QPEREIEKCT AAPAEEVHPS TDVEIQKVGE CGSVELQKLA EDSLLDLLEV NEEASMEEQS  180
RDVDVPCPHA INDNEADLME KDQTSAEEVL PSTTVEVQKV RECGSVELQK LAKDSLLNSL  240
EVNEEAHIES RDADVPCPLV ISNNEADLME KDQTSIPHNH DHKPSLMERN SSARIYEWDD  300
SIDGLEDGTS DHATRFNLPS PKGRKVSPLN KYKPANITKR RKVKKWSQLE EETLRTAVDK  360
FGRGNWKLIL DSHKDIFEER TEVDLKDKWR NMT
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN06114.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353131e-127AC235313.1 Glycine max strain Williams 82 clone GM_WBb0072N12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006582080.10.0uncharacterized protein LOC100777809
RefseqXP_014632138.10.0uncharacterized protein LOC100777809
RefseqXP_028237485.10.0uncharacterized protein LOC114416708
RefseqXP_028237486.10.0uncharacterized protein LOC114416708
TrEMBLA0A0B2PF110.0A0A0B2PF11_GLYSO; Telomeric repeat-binding factor 1 (Fragment)
TrEMBLA0A445KCS00.0A0A445KCS0_GLYSO; Uncharacterized protein
TrEMBLI1KDB00.0I1KDB0_SOYBN; Uncharacterized protein
STRINGGLYMA06G24730.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.26e-12MYB_related family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]